View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12445_low_3 (Length: 506)
Name: NF12445_low_3
Description: NF12445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12445_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 20 - 446
Target Start/End: Original strand, 486625 - 487051
Alignment:
| Q |
20 |
cgtacggctgcaggtgaacaaatgccatgtaggttaataaaatttgaagagaattataagtttaaggattataaaaaaggtttagggttaggtggatttg |
119 |
Q |
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| T |
486625 |
cgtacggctgcaggtgaacaaatgccatgtaggttaataaaatttgaagagaattgtaagtttaaggattataaaaaaggtttagggttaggtggatttg |
486724 |
T |
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| Q |
120 |
ttaaggaactnnnnnnnggttttgagagtgttgaatatgtgtatgtgtggcatgctttatgtggttattggggtgggataagacctaatattgagggtct |
219 |
Q |
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| T |
486725 |
ttaaggaactaaaaaaaggttttgagagtgttgaatatgtgtatgtgtggcatgctttatgtggttattggggtgggataagacctaatgttgagggtct |
486824 |
T |
|
| Q |
220 |
acctgaagctattgtggagaagcctaagttaaccgttggattggaaactactatggaggatttggctgttgataagattgttaataatggtgttgggtta |
319 |
Q |
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| T |
486825 |
acctgaagctattgtggagaagcctaagttaaccgttggattggaaactactatggaggatttggctgttgataagattgttaataatggtgttgggtta |
486924 |
T |
|
| Q |
320 |
gttcctcctcatttggttgatcaaatgtatgaaggtattcactctcttttggaagagtctggaattgatggggtcaaggttgatgtcatccatgtaagtc |
419 |
Q |
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| T |
486925 |
gttcctcctcatttggttgatcaaatgtatgaaggtattcactctcttttggaagagtctggaattgatggggtcaaggttgatgtcatccatgtaagtc |
487024 |
T |
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| Q |
420 |
cttccattttaatttcacaaccacaca |
446 |
Q |
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| T |
487025 |
cttccattttaatttcacaaccacaca |
487051 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 161 - 213
Target Start/End: Complemental strand, 43639593 - 43639541
Alignment:
| Q |
161 |
tatgtgtggcatgctttatgtggttattggggtgggataagacctaatattga |
213 |
Q |
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| T |
43639593 |
tatgtgtggcatgctttttgtgggtattggggtgggattaggcctaatgttga |
43639541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 34698401 - 34698353
Alignment:
| Q |
35 |
gaacaaatgccatgtaggttaataaaatttgaagagaattataagttta |
83 |
Q |
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| T |
34698401 |
gaacaaatgccatgtaggctaataaaatatgaagaaaattataaattta |
34698353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 321
Target Start/End: Complemental strand, 34698149 - 34698100
Alignment:
| Q |
272 |
atggaggatttggctgttgataagattgttaataatggtgttgggttagt |
321 |
Q |
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||||||||||| || || |||||||||||||| |||||||| |||||||| |
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| T |
34698149 |
atggaggatttagcggtggataagattgttaacaatggtgtagggttagt |
34698100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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