View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12445_low_6 (Length: 380)
Name: NF12445_low_6
Description: NF12445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12445_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 15 - 356
Target Start/End: Original strand, 12268791 - 12269132
Alignment:
| Q |
15 |
acatcacaaactggagaattttagtccagattcagaaaagataaatagctagaagagttatggtagttagtcaagtaaaacaatgcgttgtgatgatgtt |
114 |
Q |
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| T |
12268791 |
acatcacaaactggagaattttagtccagattcagaaaagataaatagctagaagagttatggtagttagtcaagtaaaacaatgcgttgtgatgatgtt |
12268890 |
T |
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| Q |
115 |
aaagattatgctagtcgtaactcatgctcgtgatttacttcaatcacaagtaattgagccaaatggnnnnnnnnnnccgcatattacgtgtcgtgctagg |
214 |
Q |
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| T |
12268891 |
aatgattatgctagtcgtaactcatgctcgtgatttacttcaatcacaagtaattgagccaaatggttttttttttccgcatattacgtgtcgtgctagg |
12268990 |
T |
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| Q |
215 |
tgtttgaatccattgaaatatcacaaatatataccatcatgttttaagtcactagaatcagtcacaaacctcgtgaattattatttttgctacgaaaaat |
314 |
Q |
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| T |
12268991 |
tgtttgaatccattgaaatatcacaaatatataccatcatgttttaagtcactagaatcagtcacaaacctcgagaattattatttttgctacgaaaaat |
12269090 |
T |
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| Q |
315 |
gttatgaggaatgtattaattgaataatggtattcatacttt |
356 |
Q |
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| T |
12269091 |
gttatgaggattgtattaattgaataatggtattcatacttt |
12269132 |
T |
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