View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12445_low_9 (Length: 283)
Name: NF12445_low_9
Description: NF12445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12445_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 34 - 273
Target Start/End: Original strand, 24890447 - 24890686
Alignment:
| Q |
34 |
atggaaatggatggggtggcaacaatacactttgtgagtacatcaattatcaggggttttgccaaatcaataggtttgattgatagcattcaatcaagta |
133 |
Q |
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| T |
24890447 |
atggaaatggatggggtggcaacaatacactttgtgagtacatcaattatgaggggttttgccaaatcaataggtttgattgatagcattcaatcaagta |
24890546 |
T |
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| Q |
134 |
gctcaatatttcgaatataaaaaatttaattaaggtttactctatcaaataccctaataatgaaacaaaaggatcctagaacttgaagttgactttcgat |
233 |
Q |
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| T |
24890547 |
gttcaatatttcgaatataaaaaaattatttaaggtttactctatcaaataccctaataatgaaacaaaaggatcctagaacttgaagttgactttcgat |
24890646 |
T |
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| Q |
234 |
tcgcaacatatattttgaaagtgctagactttcacaggtt |
273 |
Q |
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| T |
24890647 |
tcgcaacatatattttgaaaatgctagacttttacaggtt |
24890686 |
T |
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