View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12446_low_2 (Length: 397)

Name: NF12446_low_2
Description: NF12446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12446_low_2
NF12446_low_2
[»] chr8 (5 HSPs)
chr8 (12-390)||(12930678-12931054)
chr8 (26-390)||(12935424-12935786)
chr8 (161-231)||(26504985-26505055)
chr8 (117-229)||(15588948-15589060)
chr8 (34-79)||(26504850-26504895)
[»] chr4 (9 HSPs)
chr4 (12-390)||(14173939-14174316)
chr4 (12-390)||(28611554-28611931)
chr4 (25-390)||(14178693-14179057)
chr4 (25-390)||(28606805-28607169)
chr4 (26-390)||(44161588-44161949)
chr4 (26-384)||(11104477-11104829)
chr4 (25-330)||(48826701-48827000)
chr4 (53-223)||(48708086-48708256)
chr4 (138-231)||(24726288-24726381)
[»] chr1 (1 HSPs)
chr1 (26-390)||(34907141-34907503)
[»] chr7 (6 HSPs)
chr7 (26-390)||(37040426-37040789)
chr7 (12-381)||(15290243-15290608)
chr7 (26-331)||(12099060-12099361)
chr7 (174-386)||(12082021-12082227)
chr7 (26-108)||(12084669-12084751)
chr7 (11-231)||(2757198-2757418)
[»] chr5 (4 HSPs)
chr5 (26-376)||(29106878-29107224)
chr5 (25-384)||(42910992-42911346)
chr5 (12-106)||(38994685-38994779)
chr5 (12-208)||(38997124-38997320)
[»] chr2 (1 HSPs)
chr2 (25-390)||(8539185-8539549)
[»] chr3 (3 HSPs)
chr3 (247-385)||(51302168-51302306)
chr3 (12-108)||(51302937-51303033)
chr3 (117-153)||(51302308-51302344)
[»] chr6 (2 HSPs)
chr6 (26-208)||(2100199-2100379)
chr6 (201-231)||(2100723-2100753)


Alignment Details
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 12 - 390
Target Start/End: Complemental strand, 12931054 - 12930678
Alignment:
Q  12 gctctgataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnn 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||       
T  12931054 gctctgataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagcgat 12930955  T
Q  112 nnnnn--tgaacaccaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatat 209  Q
           ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12930954 aaaaaaatgaacaccaatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatat 12930855  T
Q  210 tacaatattctctccactctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcac 309  Q
    ||||||||||||||||||||||              |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  12930854 tacaatattctctccactctctcacacacaca----agagatacaatatagtgtttcccgtgagacctacttttattctaatgctattattttatagcac 12930759  T
Q  310 ctagaagttatagagatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctc 390  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  12930758 ctagaagttatagagatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctc 12930678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 26 - 390
Target Start/End: Complemental strand, 12935786 - 12935424
Alignment:
Q  26 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnn--tgaacac 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||          |||||||    
T  12935786 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaattcaaaagaaactggatcttgcagcgcagcggtagcgataaaaaaatgaacac 12935687  T
Q  124 caatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc 223  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12935686 caatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc 12935587  T
Q  224 cactctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttataga 323  Q
    ||||||||              |||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||    
T  12935586 cactctctcacacacaca----agagatacaatatagtgtttcccgtgagacctacttttactctaatgctattattttatagcacctagaagttataga 12935491  T
Q  324 gatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctc 390  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  12935490 gatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctc 12935424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 161 - 231
Target Start/End: Original strand, 26504985 - 26505055
Alignment:
Q  161 aaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactctct 231  Q
    |||||||| | ||||||||| |||||||||| |||||| |||| |||||||||||||||| || |||||||    
T  26504985 aaaaccacagtacaaactccaaaaaatattcaactataataaaaaatattacaatattctttcaactctct 26505055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 117 - 229
Target Start/End: Complemental strand, 15589060 - 15588948
Alignment:
Q  117 tgaacaccaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaata 216  Q
    |||||| |||||||||   || ||||||||||| || |||| |||||| || | |||||||||  ||||||||| |||| ||| ||| |||||||||| |    
T  15589060 tgaacatcaatatttattttgaaaaaccctctattaatgagagaaaaatcaagtgacaaactctaaaaaatatttcactttatcaaacaatattacaaca 15588961  T
Q  217 ttctctccactct 229  Q
    || ||||||||||    
T  15588960 ttttctccactct 15588948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 79
Target Start/End: Original strand, 26504850 - 26504895
Alignment:
Q  34 tcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaa 79  Q
    |||||||| |||| | ||||||||||||||||| ||||||||||||    
T  26504850 tcgacgagtttaatggaagtgtaaattaaaatttcaaaatccaaaa 26504895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 12 - 390
Target Start/End: Complemental strand, 14174316 - 14173939
Alignment:
Q  12 gctctgataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnn 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||        
T  14174316 gctctgataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagtgat 14174217  T
Q  112 nnnnn---tgaacaccaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaata 208  Q
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14174216 aaaaaaaatgaacaccaatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaata 14174117  T
Q  209 ttacaatattctctccactctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagca 308  Q
    |||||||||||||||||||||||              |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  14174116 ttacaatattctctccactctctcacacacaca----agagatacaatatagtgtttcccgtgagacctacttctattctaatgctattattttatagca 14174021  T
Q  309 cctagaagttatagagatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctc 390  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14174020 cctagaagttatagagatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctc 14173939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 12 - 390
Target Start/End: Original strand, 28611554 - 28611931
Alignment:
Q  12 gctctgataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnn 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||       
T  28611554 gctctgataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagcgat 28611653  T
Q  112 nnnnn---tgaacaccaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaata 208  Q
            ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28611654 aaaaaaaatgaacaccaatatttaacgtgaaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaata 28611753  T
Q  209 ttacaatattctctccactctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagca 308  Q
    |||||||||||||||||||||||              |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  28611754 ttacaatattctctccactctctcacacacaca----agagatacaatatagtgtttcccgtgagacctacttctattctaatgctattattttatagca 28611849  T
Q  309 cctagaagttatagagatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctc 390  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  28611850 cctagaagttatagagatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctc 28611931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 25 - 390
Target Start/End: Complemental strand, 14179057 - 14178693
Alignment:
Q  25 ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnn---tgaac 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||           |||||    
T  14179057 ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagcaataaaaaaaatgaac 14178958  T
Q  122 accaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctc 221  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14178957 accaatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctc 14178858  T
Q  222 tccactctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttata 321  Q
    ||||||||||              |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  14178857 tccactctctcacacacaca----agagatacaatatagtgtttcccgtgagacctacttctattctaatgctattattttatagcacctagaagttata 14178762  T
Q  322 gagatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctc 390  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14178761 gagatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctc 14178693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 25 - 390
Target Start/End: Original strand, 28606805 - 28607169
Alignment:
Q  25 ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnn---tgaac 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||           | |||    
T  28606805 ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagcgataaaaaaaattaac 28606904  T
Q  122 accaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctc 221  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28606905 accaatatttaacgtgaaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctc 28607004  T
Q  222 tccactctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttata 321  Q
    ||||||||||              |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  28607005 tccactctctcacacacaca----agagatacaatatagtgtttcccgtgagacctacttctattctaatgctattattttatagcacctagaagttata 28607100  T
Q  322 gagatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctc 390  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  28607101 gagatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctc 28607169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 26 - 390
Target Start/End: Complemental strand, 44161949 - 44161588
Alignment:
Q  26 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnn---tgaaca 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||    
T  44161949 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcgataaaaaaaatgaaca 44161850  T
Q  123 ccaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctct 222  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||    
T  44161849 ccaatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaat--tctct 44161752  T
Q  223 ccactctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatag 322  Q
    |||||||||              ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  44161751 ccactctcttacacacaca----agagatacaatatagtgtttcccgtaagacctacttctattctaatgctattattttatagcacctagaagttatag 44161656  T
Q  323 agatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctc 390  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  44161655 agatgatacccacccggtgtatttttcccacactctctggatttactcaacactctattattcctctc 44161588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 26 - 384
Target Start/End: Complemental strand, 11104829 - 11104477
Alignment:
Q  26 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnntgaacacca 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||        |||||||||    
T  11104829 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagctgtagcgataaaaatgaacacca 11104730  T
Q  126 atatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctcca 225  Q
    ||||||||| | ||||| |||||||||  ||||| ||| |||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||    
T  11104729 atatttaacatagaaaatcctctaatatcgagggtaaa-ccacgggacaaactccgaaaaatattccaccatatctaagaatattacaatattctctcca 11104631  T
Q  226 ctctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagaga 325  Q
    ||||||              ||||||||||||||||||||||||||||||| ||| |||||| ||||||||||| ||||| |||||||||||||||||||    
T  11104630 ctctcttacacacaa-----agagatacaatatagtgtttcccgtgagacccactcctattcaaatgctattattttataacacctagaagttatagaga 11104536  T
Q  326 tgatacccacccggtgtatttttcccacactctctggatttactcaacactctattttt 384  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  11104535 tgatatccacccggtgtatttttcctacactctctggatttactcaacactctattttt 11104477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 25 - 330
Target Start/End: Original strand, 48826701 - 48827000
Alignment:
Q  25 ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnnt-gaacac 123  Q
    |||||||| |||||||||||||||||| |||||||||||||| |||||| |||  |||||||||||||||||||||||||||||          ||||||    
T  48826701 ttgttgggatcgacgagcttaacgcaattgtaaattaaaatttcaaaattcaa--gagattggatcttgcagcgcagcggtagcgatagaaaaagaacac 48826798  T
Q  124 caatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc 223  Q
    ||||||||||||||||||| |||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||     
T  48826799 caatatttaacgtggaaaatcctctaataccgagggaaaaatcacgggacaa-ctccgaaaaatattccactatattaaagaatattacaatattctctt 48826897  T
Q  224 cactctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttataga 323  Q
    | ||||||              |||||||||||||||||||||||||||||   ||| |||||  ||||||||||| |||||||||||||||||||||||    
T  48826898 cgctctct----tacacacacaagagatacaatatagtgtttcccgtgagattcactcctatttgaatgctattattttatagcacctagaagttataga 48826993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 53 - 223
Target Start/End: Original strand, 48708086 - 48708256
Alignment:
Q  53 tgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnntgaacaccaatatttaacgtggaaaaccctctaata 152  Q
    |||||||||||||||||||||  |||||| |||| ||||| || ||||| ||| ||        | || ||||||||||||| || ||||| || |||||    
T  48708086 tgtaaattaaaattccaaaatataaaagaaattgaatcttacaacgcagtggtggcgataaaattaaataccaatatttaacatgaaaaactctataata 48708185  T
Q  153 ctgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc 223  Q
    || || ||||||||||| |||||||||| ||||||||| || ||||||||| |||||||||||||||||||    
T  48708186 ctaagagaaaaaccacgtgacaaactccaaaaaatatttcattatattaaaaaatattacaatattctctc 48708256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 138 - 231
Target Start/End: Original strand, 24726288 - 24726381
Alignment:
Q  138 gaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactctct 231  Q
    ||||||| |||||||   |||||||| ||||| ||||||||| ||||||||||||| |||||||||||| || | ||||||||||||| |||||    
T  24726288 gaaaaccatctaatatcaagggaaaagccacgagacaaactctgaaaaatattccattatattaaagaacataataatattctctccattctct 24726381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 26 - 390
Target Start/End: Complemental strand, 34907503 - 34907141
Alignment:
Q  26 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnn--tgaacac 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||          |||||||    
T  34907503 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagcgataaaaaaatgaacac 34907404  T
Q  124 caatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc 223  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34907403 caatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc 34907304  T
Q  224 cactctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttataga 323  Q
    ||||||||              |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  34907303 cactctctcacacacaca----agagatacaatatagtgtttcccgtgagacctacttttattctaatgctattattttatagcacctagaagttataga 34907208  T
Q  324 gatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctc 390  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  34907207 gatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctc 34907141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 26 - 390
Target Start/End: Original strand, 37040426 - 37040789
Alignment:
Q  26 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnn---tgaaca 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||           ||||||    
T  37040426 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaaaagactggatcttgcagcgcagcggtagcgataaaaaaaatgaaca 37040525  T
Q  123 ccaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctct 222  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  37040526 ccaatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattttct 37040625  T
Q  223 ccactctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatag 322  Q
    |||||||||              |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  37040626 ccactctctcacacacaca----agagatacaatatagtgttttccgtgagacctacttctattctaatgctattattttatagcacctagaagttatag 37040721  T
Q  323 agatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctc 390  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  37040722 agatgatacccacccgatgtatttttcccacactctctggatttactcaacactctatttttcctctc 37040789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 12 - 381
Target Start/End: Complemental strand, 15290608 - 15290243
Alignment:
Q  12 gctctgataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaa-gagattggatcttgcagcgcagcggtagcnn 110  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||  ||||      
T  15290608 gctctgataccacttgttgggctcgacgagcttaacgcaattgtaaattaaaatttcaaaatccaaaaagagattggatcttgcagcgcagccttagcga 15290509  T
Q  111 nnnnnn---tgaacaccaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaat 207  Q
             ||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||| ||| || |||||||||||| ||||||    
T  15290508 taaaaaaaatgaacaccaatatttaacgtggaaaaccctctaataccgaggtataaaccacgggacaaactccaaaagattttccactatatttaagaat 15290409  T
Q  208 attacaatattctctccactctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagc 307  Q
    ||||||||||||||||||||||||              |||||||||||||||||||| |||||||||| ||| |||||| ||||||||  ||||  |||    
T  15290408 attacaatattctctccactctct----tacacacacaagagatacaatatagtgttt-ccgtgagacccactcctattcgaatgctat--tatttcagc 15290316  T
Q  308 acctagaagttatagagatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatt 381  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||    
T  15290315 acctagaagttatagagatgatacccacccggtgtattttt-ccacactttctggatttagtcaacactctatt 15290243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 26 - 331
Target Start/End: Complemental strand, 12099361 - 12099060
Alignment:
Q  26 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnntgaacacca 125  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||  ||||||||||| || || ||||        |||| | ||    
T  12099361 tgttgggctcgacgagtttaacgcgagtgtaaattaaaattccaaaatccaaaagagatatgatcttgcagctcaccgatagcgataaaaatgaaaagca 12099262  T
Q  126 atatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctcca 225  Q
    |||||| ||||| |||||||||||||   || |||||||||| ||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||    
T  12099261 atattttacgtgaaaaaccctctaatgacgaaggaaaaaccaagggacaaactccgaaaaaatttcaactatattaaagaatattacaatattctctcca 12099162  T
Q  226 ctctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagaga 325  Q
    ||||||              ||||| ||||||| |||||||  |||||||  ||| |||||| |||| |||||| ||||| |||||| ||||||||||||    
T  12099161 ctctct----tacacgcacaagagacacaatattgtgtttctagtgagactcactcctattcaaatgatattattttataacacctaaaagttatagaga 12099066  T
Q  326 tgatac 331  Q
    ||||||    
T  12099065 tgatac 12099060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 174 - 386
Target Start/End: Complemental strand, 12082227 - 12082021
Alignment:
Q  174 aaactccgaaaaatattccactatattaaagaatattacaatattctctccactctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgag 273  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||              |||||||||||||||||||||   ||||    
T  12082227 aaactccaaaaaatattccactatattaa-gaatattacaatattttctccactctcttacacggaaa----agagatacaatatagtgtttctaatgag 12082133  T
Q  274 acctacttctattctaatgctattatattatagcacctagaagttatagagatgatacccacccggtgtatttttcccacactctctggatttactcaac 373  Q
    ||   || |||||| |||| |||||| ||||||| |||||||||||||||||| ||||| ||||| | |||||||||| |  | ||||||||||| ||||    
T  12082132 actcgctcctattcaaatgttattattttatagcgcctagaagttatagagataatacctacccgatatatttttccc-ctttttctggatttacccaac 12082034  T
Q  374 actctatttttct 386  Q
    |||||| ||||||    
T  12082033 actctaattttct 12082021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 26 - 108
Target Start/End: Complemental strand, 12084751 - 12084669
Alignment:
Q  26 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagc 108  Q
    |||||||||| ||||||||||| | || ||||||||||||| |||||||||| ||| ||||||||||| |||||| |||||||    
T  12084751 tgttgggctcaacgagcttaacacgagggtaaattaaaatttcaaaatccaatagacattggatcttgtagcgcaacggtagc 12084669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 231
Target Start/End: Original strand, 2757198 - 2757418
Alignment:
Q  11 tgctctgataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnn 110  Q
    |||||| ||| ||||||||| | || |||||||||   ||||||||||||||||||||||||| ||||||| |||| ||  ||||| | |||  || |      
T  2757198 tgctcttatatcacttgttgtgttcaacgagcttattacaagtgtaaattaaaattccaaaattcaaaagaaattgaattatgcagtgtagcaataacga 2757297  T
Q  111 nnnnnntg-aacaccaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatat 209  Q
          |  |||||||||||||||  || ||| |||| |||| || | |||||||||| | |||||| |  ||||| |||||||||||||| || |||||    
T  2757298 taaaaatttaacaccaatatttaatatgaaaacccctttaatgcttaaggaaaaaccatgagacaaattttgaaaa-tattccactatatttaaaaatat 2757396  T
Q  210 tacaatattctctccactctct 231  Q
    | || |||||||||||||||||    
T  2757397 tgcactattctctccactctct 2757418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 26 - 376
Target Start/End: Original strand, 29106878 - 29107224
Alignment:
Q  26 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnntgaacacca 125  Q
    ||||||| |||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||        |||||||||    
T  29106878 tgttgggatcgaggagcttaatgcaagtgtaaattaaaattccaaaatccaaaaaagattggatcttgcagcgcagcggtagcgttaaaaatgaacacca 29106977  T
Q  126 atatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctcca 225  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29106978 atatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctcca 29107077  T
Q  226 ctctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagaga 325  Q
    ||||||              |||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||    
T  29107078 ctctct----tacacacacaagagatacaa-atagtgtttcccgtgagacctacttctattctaatgctattattttttagcacctagaagttataaaga 29107172  T
Q  326 tgata-cccacccggtgtatttttcccacactctctggatttactcaacact 376  Q
    ||||| |||||||  |||||||||||||||||||||||||||||||||||||    
T  29107173 tgataccccacccaatgtatttttcccacactctctggatttactcaacact 29107224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 25 - 384
Target Start/End: Original strand, 42910992 - 42911346
Alignment:
Q  25 ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnntgaacacc 124  Q
    |||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||| |||||||||||||||||| | |        ||||||||    
T  42910992 ttgttgggctcgacgagcttaacgcaagtggaaattaaaattttaaaatccaaaagagattagatcttgcagcgcagcggcaacgataaaaatgaacacc 42911091  T
Q  125 aatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctcc 224  Q
    |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  42911092 aatatttaacatggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaa-tattccactatatttaagaatattacaatattctctcc 42911190  T
Q  225 actctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagag 324  Q
    |||||||              | ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  42911191 actctctcacacacaca----aaagatacaatatagtgtttcccttgagacctacttctattctaatgctattattttatagcaccaagaagttatagag 42911286  T
Q  325 atgatacccacccggtgtatttttcccacactctctggatttactcaacactctattttt 384  Q
    ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  42911287 atgatacccacccagtgtattttttccacactctctggatttactcaacactctattttt 42911346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 12 - 106
Target Start/End: Original strand, 38994685 - 38994779
Alignment:
Q  12 gctctgataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggta 106  Q
    ||||||||||||||||||||||| ||||| ||||| || |||||||||||||||||||||| |||||  | |||||||||||||| |||||||||    
T  38994685 gctctgataccacttgttgggcttgacgatcttaatgctagtgtaaattaaaattccaaaacccaaacaaaattggatcttgcagtgcagcggta 38994779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 12 - 208
Target Start/End: Original strand, 38997124 - 38997320
Alignment:
Q  12 gctctgataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnn 111  Q
    ||||| |||| |||||||||| |||| | |||||| ||  |||||||||||||||||| ||||||||||| |||  |||||| || ||| ||  |         
T  38997124 gctctaatactacttgttgggttcgaagggcttaatgcgggtgtaaattaaaattccagaatccaaaagaaattaaatcttgaagtgcatcgacaatgat 38997223  T
Q  112 nnnnntgaacaccaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaata 208  Q
          ||||| |||||||| |||| |||||||||||||||  ||  ||||||| |||||||||||||| ||||||| |||| ||||||||||||||    
T  38997224 aaaaaagaacagcaatattttacgtcgaaaaccctctaatatcgaacgaaaaactacgggacaaactccaaaaaataatccattatattaaagaata 38997320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 181; Significance: 1e-97; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 25 - 390
Target Start/End: Complemental strand, 8539549 - 8539185
Alignment:
Q  25 ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnn-tgaacac 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |         ||||||     
T  8539549 ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaattctaaaagagattggatcttgcagcgcagcggtaacaataaaaaatgaacat 8539450  T
Q  124 caatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc 223  Q
    |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||    
T  8539449 caatatttaacgtggaaaaccctctaataccgagggaaaaatcacgggacaaactccgaaagatattccactatatttaagaatattacaatattatctc 8539350  T
Q  224 cactctctnnnnnnnnnnnnnnagagatacaa---tatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttat 320  Q
    ||||||||              ||||||||||   |||||||||| |||||||||| ||| |||||| | ||||||||| ||| |||||||| |||||||    
T  8539349 cactctct----tacacacacaagagatacaatattatagtgttt-ccgtgagacccactcctattcgattgctattattttacagcacctaaaagttat 8539255  T
Q  321 agagatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcttctc 390  Q
    |||||||||||||| ||| |||||||||||||||||||||| ||||||| |||||| |||||||| ||||    
T  8539254 agagatgatacccatccgatgtatttttcccacactctctgaatttactgaacactatatttttcctctc 8539185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 99; Significance: 9e-49; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 247 - 385
Target Start/End: Complemental strand, 51302306 - 51302168
Alignment:
Q  247 gagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatgatacccacccggtgtattt 346  Q
    |||||||||||||||||||||||||||||| ||| |||||| ||||| ||| | ||||||||||||||||||||||||||||| ||||||||||||||||    
T  51302306 gagatacaatatagtgtttcccgtgagacccactcctattcgaatgcaattgttttatagcacctagaagttatagagatgattcccacccggtgtattt 51302207  T
Q  347 ttcccacactctctggatttactcaacactctatttttc 385  Q
    |  ||||||||||||||||||||||| ||||||||||||    
T  51302206 tatccacactctctggatttactcaatactctatttttc 51302168  T

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Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 12 - 108
Target Start/End: Complemental strand, 51303033 - 51302937
Alignment:
Q  12 gctctgataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagc 108  Q
    |||| |||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  51303033 gctccgataccacttgttgggatcgacgagcttaatgcaagtgtaaattaaaatttcaaaatccaaaacagattggatcttgcagcgcagcggtagc 51302937  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 117 - 153
Target Start/End: Complemental strand, 51302344 - 51302308
Alignment:
Q  117 tgaacaccaatatttaacgtggaaaaccctctaatac 153  Q
    |||||||||||||||||||||||||||||||||||||    
T  51302344 tgaacaccaatatttaacgtggaaaaccctctaatac 51302308  T

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Target: chr6 (Bit Score: 74; Significance: 8e-34; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 26 - 208
Target Start/End: Original strand, 2100199 - 2100379
Alignment:
Q  26 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattgga-tcttgcagcgcagcggtagcnnnnnnnntgaacacc 124  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||| || | ||||||| || || ||          |||||| |    
T  2100199 tgttgggctcgacgagcttaacacaagtgtaaattaaaattccaaaattcataagagatttgaattttgcagcacaacgataatgataaaattgaacatc 2100298  T
Q  125 aatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaata 208  Q
    ||||||||| |||||||||||| ||||| |||| |||||||   ||| ||||||||||||||||||||||||||||||||||||    
T  2100299 aatatttaaggtggaaaaccctttaataatgagcgaaaaac---ggggcaaactccgaaaaatattccactatattaaagaata 2100379  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 201 - 231
Target Start/End: Original strand, 2100723 - 2100753
Alignment:
Q  201 aaagaatattacaatattctctccactctct 231  Q
    |||||||||||||||||||||||||||||||    
T  2100723 aaagaatattacaatattctctccactctct 2100753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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