View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12447_low_4 (Length: 289)

Name: NF12447_low_4
Description: NF12447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12447_low_4
NF12447_low_4
[»] chr8 (5 HSPs)
chr8 (18-279)||(5393323-5393590)
chr8 (45-167)||(30511574-30511696)
chr8 (107-170)||(34127361-34127424)
chr8 (129-174)||(31746310-31746355)
chr8 (132-172)||(15127504-15127544)
[»] chr7 (4 HSPs)
chr7 (21-174)||(46688376-46688530)
chr7 (73-168)||(35778947-35779043)
chr7 (107-156)||(33542188-33542237)
chr7 (118-174)||(41672436-41672492)
[»] chr2 (8 HSPs)
chr2 (21-154)||(22545326-22545460)
chr2 (23-150)||(36116885-36117011)
chr2 (120-172)||(8393363-8393415)
chr2 (28-165)||(38492640-38492775)
chr2 (21-103)||(6383528-6383611)
chr2 (120-168)||(15577983-15578031)
chr2 (120-172)||(36846910-36846962)
chr2 (118-174)||(37355183-37355239)
[»] chr5 (4 HSPs)
chr5 (28-154)||(22091336-22091460)
chr5 (68-174)||(5284602-5284707)
chr5 (111-168)||(10932704-10932761)
chr5 (129-174)||(34676279-34676324)
[»] chr1 (4 HSPs)
chr1 (21-131)||(29043325-29043436)
chr1 (118-174)||(4813363-4813419)
chr1 (110-156)||(50143137-50143183)
chr1 (129-174)||(5321924-5321969)
[»] chr3 (7 HSPs)
chr3 (108-141)||(49320104-49320137)
chr3 (68-174)||(31819499-31819607)
chr3 (68-158)||(13628276-13628363)
chr3 (129-174)||(21933082-21933127)
chr3 (129-174)||(41739878-41739923)
chr3 (129-174)||(44083783-44083828)
chr3 (129-158)||(44698442-44698471)
[»] chr4 (2 HSPs)
chr4 (68-174)||(39414328-39414436)
chr4 (129-174)||(52198631-52198676)
[»] chr6 (1 HSPs)
chr6 (107-168)||(33221281-33221343)


Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 18 - 279
Target Start/End: Complemental strand, 5393590 - 5393323
Alignment:
Q  18 ctttgtataaatgtacctaaaataccctttgtatatgtataaagttaatcttgacttttcatattccaagacacttattggtattagttggggtttattt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5393590 ctttgtataaatgtacctaaaataccctttgtatatgtataaagttaatcttgacttttcatattccaagacacttattggtattagttggggtttattt 5393491  T
Q  118 ggaaaagaaacaataaatgtatcttgtaatttgaaaatgggcttatatttagggacag------nnnnnnnnnnngtcaaatgggtggttatatttaggg 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 |||||||||||||||||||||||||    
T  5393490 ggaaaagaaacaataaatgtatcttgtaatttgaaaatgggcttatatttagggacagtttttttttttttttttgtcaaatgggtggttatatttaggg 5393391  T
Q  212 acatagggagtattttcaatgagctcttttgaaaccacttatgaatgagcacttaattagtctctctg 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  5393390 acatagggagtattttcaatgagctcttttgaaaccacttatgaatgagcacttaattaatctctctg 5393323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 45 - 167
Target Start/End: Complemental strand, 30511696 - 30511574
Alignment:
Q  45 tttgtatatgtataaagttaatcttgacttttcatattccaagacacttattggtattagtt-ggggtttatttggaaaagaaacaataaatgtatcttg 143  Q
    |||||||||||||| |||||||||||| || || |||| ||||||||||| |||| ||| || |||||| |||||||||  ||||||||||||||||| |    
T  30511696 tttgtatatgtatatagttaatcttgatttctcgtatttcaagacacttagtggtgttaattaggggttgatttggaaat-aaacaataaatgtatctag 30511598  T
Q  144 taatttgaaaatgggcttatattt 167  Q
    |||||||||||  || ||||||||    
T  30511597 taatttgaaaagtggtttatattt 30511574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 107 - 170
Target Start/End: Complemental strand, 34127424 - 34127361
Alignment:
Q  107 ggggtttatttggaaaagaaacaataaatgtatcttgtaatttgaaaatgggcttatatttagg 170  Q
    |||||||||||||||||||| |||||||||||||| ||||| ||||||  ||||||||||||||    
T  34127424 ggggtttatttggaaaagaagcaataaatgtatctagtaatatgaaaagaggcttatatttagg 34127361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 174
Target Start/End: Complemental strand, 31746355 - 31746310
Alignment:
Q  129 aataaatgtatcttgtaatttgaaaatgggcttatatttagggaca 174  Q
    ||||||||||||| |||||||||||| ||| ||| |||||||||||    
T  31746355 aataaatgtatctagtaatttgaaaaggggtttacatttagggaca 31746310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 172
Target Start/End: Complemental strand, 15127544 - 15127504
Alignment:
Q  132 aaatgtatcttgtaatttgaaaatgggcttatatttaggga 172  Q
    ||||||||||  ||||||||||||| |||||||||||||||    
T  15127544 aaatgtatctaataatttgaaaatgtgcttatatttaggga 15127504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 21 - 174
Target Start/End: Complemental strand, 46688530 - 46688376
Alignment:
Q  21 tgtataaatgtacctaaaataccctttgtatatgtataaagttaatcttgacttttcatattccaagacacttattggtattagtt-ggggtttatttgg 119  Q
    ||||| || ||||| |||||||||| ||||||| | |  ||| ||| |||||||||||||||||||| |||||| |||||||| || |||||||||||||    
T  46688530 tgtatgaaggtacccaaaataccctctgtatatatgtgtagtaaattttgacttttcatattccaaggcacttagtggtattaattaggggtttatttgg 46688431  T
Q  120 aaaagaaacaataaatgtatcttgtaatttgaaaatgggcttatatttagggaca 174  Q
    ||||||| |||| ||||||||| ||||||||||||  ||||||||||||||||||    
T  46688430 aaaagaagcaatgaatgtatctagtaatttgaaaagtggcttatatttagggaca 46688376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 73 - 168
Target Start/End: Original strand, 35778947 - 35779043
Alignment:
Q  73 ttttcatattccaagacacttattggtattagtt-ggggtttatttggaaaagaaacaataaatgtatcttgtaatttgaaaatgggcttatattta 168  Q
    |||||| ||||||| ||| ||  |||||||| || |||||||||||| |||||||||||||||| ||| | ||||||||||||| ||| ||||||||    
T  35778947 ttttcacattccaaaacatttggtggtattaattaggggtttatttgaaaaagaaacaataaatatatttagtaatttgaaaattggcctatattta 35779043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 156
Target Start/End: Complemental strand, 33542237 - 33542188
Alignment:
Q  107 ggggtttatttggaaaagaaacaataaatgtatcttgtaatttgaaaatg 156  Q
    |||||||||||  |||||||||| ||||| ||||||||||||||||||||    
T  33542237 ggggtttatttaaaaaagaaacattaaatatatcttgtaatttgaaaatg 33542188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 174
Target Start/End: Complemental strand, 41672492 - 41672436
Alignment:
Q  118 ggaaaagaaacaataaatgtatcttgtaatttgaaaatgggcttatatttagggaca 174  Q
    |||||| ||| |||||||| |||| |||||||| | | |||||||||||||||||||    
T  41672492 ggaaaaaaaataataaatgcatctagtaatttgtataagggcttatatttagggaca 41672436  T

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Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 154
Target Start/End: Original strand, 22545326 - 22545460
Alignment:
Q  21 tgtataaatgtacctaaaataccctttgtatatgtataaagttaatcttgacttttcatattccaagacacttattggtattagtt-ggggtttatttgg 119  Q
    |||||||||||||||| |||||||||||||| |||||   |  |||   |  |||||||| ||||||| ||||| |||||||| || |||||||||||||    
T  22545326 tgtataaatgtacctataataccctttgtatgtgtatgtggaaaattacgctttttcatagtccaagagacttagtggtattaattaggggtttatttgg 22545425  T
Q  120 aaaagaaacaataaatgtatcttgtaatttgaaaa 154  Q
    ||||||| |||||||||||||| ||||||||||||    
T  22545426 aaaagaagcaataaatgtatctagtaatttgaaaa 22545460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 23 - 150
Target Start/End: Complemental strand, 36117011 - 36116885
Alignment:
Q  23 tataaatgtacctaaaataccctttgtatatgtataaagttaatcttgacttttcatattccaagacacttattggtattagttggg-gtttatttggaa 121  Q
    |||| ||||| |||||||||  |||||||||| |||   |||||||||| |||||||||||||||||||||| ||| |||| ||  | ||||||||||||    
T  36117011 tatagatgtaactaaaatac--tttgtatatgaatatcattaatcttgatttttcatattccaagacacttagtggcattaattaagcgtttatttggaa 36116914  T
Q  122 aagaaacaataaatgtatcttgtaatttg 150  Q
    ||||| |||||||||||||| ||||||||    
T  36116913 aagaagcaataaatgtatctagtaatttg 36116885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 120 - 172
Target Start/End: Original strand, 8393363 - 8393415
Alignment:
Q  120 aaaagaaacaataaatgtatcttgtaatttgaaaatgggcttatatttaggga 172  Q
    |||| ||| |||||||||||||||||||||||||||||| |||||||||||||    
T  8393363 aaaaaaaataataaatgtatcttgtaatttgaaaatgggtttatatttaggga 8393415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 28 - 165
Target Start/End: Complemental strand, 38492775 - 38492640
Alignment:
Q  28 atgtacctaaaataccctttgtatatgtataaagttaatcttgacttttcatattccaagacacttattggtattagttgg-ggtttatttggaaaagaa 126  Q
    |||||| |||||| | |||||||||||||    |||||| ||||||||||||||||||||| | ||| || ||||| || | |||||||||||| |||||    
T  38492775 atgtacttaaaatccgctttgtatatgtag---gttaatgttgacttttcatattccaagatagttagtgatattaattagaggtttatttggagaagaa 38492679  T
Q  127 acaataaatgtatcttgtaatttgaaaatgggcttatat 165  Q
    |||  |||||||| |  ||||||||||||  ||||||||    
T  38492678 acaccaaatgtatttaataatttgaaaattagcttatat 38492640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 103
Target Start/End: Original strand, 6383528 - 6383611
Alignment:
Q  21 tgtataaatgtacctaaaatacc-ctttgtatatgtataaagttaatcttgacttttcatattccaagacacttattggtatta 103  Q
    |||||| || ||||||||||||| ||||||||||||||| |||||| ||  |||| ||||||||||||| ||||  ||||||||    
T  6383528 tgtatagatatacctaaaataccactttgtatatgtatatagttaacctcaacttctcatattccaagagacttggtggtatta 6383611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 168
Target Start/End: Complemental strand, 15578031 - 15577983
Alignment:
Q  120 aaaagaaacaataaatgtatcttgtaatttgaaaatgggcttatattta 168  Q
    |||| ||| |||||||||||||||||||||||||||| | |||||||||    
T  15578031 aaaaaaaataataaatgtatcttgtaatttgaaaatgtgtttatattta 15577983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 172
Target Start/End: Original strand, 36846910 - 36846962
Alignment:
Q  120 aaaagaaacaataaatgtatcttgtaatttgaaaatgggcttatatttaggga 172  Q
    |||| ||| ||||||||||||| | |||||||||||||| |||||||||||||    
T  36846910 aaaaaaaataataaatgtatctggaaatttgaaaatgggtttatatttaggga 36846962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 37355183 - 37355239
Alignment:
Q  118 ggaaaagaaacaataaatgtatcttgtaatttgaaaatgggcttatatttagggaca 174  Q
    |||||| ||| |||||||| |||| |||||||||||| ||| |||||||||| ||||    
T  37355183 ggaaaataaataataaatgcatctagtaatttgaaaaggggtttatatttagagaca 37355239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 28 - 154
Target Start/End: Original strand, 22091336 - 22091460
Alignment:
Q  28 atgtacctaaaataccctttgtatatgtataaagttaatcttgacttttcatattccaagacacttattggtattagttggggtttatt-tggaaaagaa 126  Q
    ||||||||||||||||||||  |||||||||  |||||  ||||||  |||||||||||||||||| |||||||   | |||||||||| ||||||| ||    
T  22091336 atgtacctaaaatacccttttcatatgtatatggttaacattgactactcatattccaagacacttgttggtat--atcggggtttattgtggaaaa-aa 22091432  T
Q  127 acaataaatgtatcttgtaatttgaaaa 154  Q
    || |||||||||||| ||| ||||||||    
T  22091433 actataaatgtatctagtagtttgaaaa 22091460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 174
Target Start/End: Original strand, 5284602 - 5284707
Alignment:
Q  68 ttgacttttcatattccaagacacttattggtattagttggggtttatttggaaaagaaacaataaatgtatcttgtaatttgaaaatgggcttatattt 167  Q
    ||||| |||||||||| ||| ||| || |||||||| ||  |||||||||||||||||| ||||||||| |||| |||| |||||||| |||||||| ||    
T  5284602 ttgacatttcatattctaaggcacgtagtggtattaattacggtttatttggaaaagaagcaataaatgcatctagtaacttgaaaat-ggcttatagtt 5284700  T
Q  168 agggaca 174  Q
     ||||||    
T  5284701 ggggaca 5284707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 168
Target Start/End: Complemental strand, 10932761 - 10932704
Alignment:
Q  111 tttatttggaaaagaaacaataaatgtatcttgtaatttgaaaatgggcttatattta 168  Q
    |||||||  |||||||||||||||| | ||| |||||||||||| || ||||||||||    
T  10932761 tttatttaaaaaagaaacaataaatatgtctagtaatttgaaaagggacttatattta 10932704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 174
Target Start/End: Original strand, 34676279 - 34676324
Alignment:
Q  129 aataaatgtatcttgtaatttgaaaatgggcttatatttagggaca 174  Q
    ||||||||||||| |||||||||||| | | |||||||||||||||    
T  34676279 aataaatgtatctagtaatttgaaaaggagtttatatttagggaca 34676324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 131
Target Start/End: Original strand, 29043325 - 29043436
Alignment:
Q  21 tgtataaatgtacctaaaataccctttgtatatgtataaagttaatcttgacttttcatattccaagacacttattggtattagtt-ggggtttatttgg 119  Q
    |||| |||| ||||||||||||||||||||| |||||  | | ||| |||  |||||||||| |||||| |||| |||||||| || ||| |||||||||    
T  29043325 tgtagaaatttacctaaaataccctttgtatgtgtatgtaataaattttgttttttcatatttcaagacgcttagtggtattaattagggatttatttgg 29043424  T
Q  120 aaaagaaacaat 131  Q
    ||||||| ||||    
T  29043425 aaaagaagcaat 29043436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 174
Target Start/End: Complemental strand, 4813419 - 4813363
Alignment:
Q  118 ggaaaagaaacaataaatgtatcttgtaatttgaaaatgggcttatatttagggaca 174  Q
    |||||| ||| |||||||| |||| |||||||||||| ||| |||||||||||||||    
T  4813419 ggaaaaaaaataataaatgcatctagtaatttgaaaaggggtttatatttagggaca 4813363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 156
Target Start/End: Complemental strand, 50143183 - 50143137
Alignment:
Q  110 gtttatttggaaaagaaacaataaatgtatcttgtaatttgaaaatg 156  Q
    ||||||||| ||||||||||||||||| ||||| |||||| ||||||    
T  50143183 gtttatttgaaaaagaaacaataaatgaatcttttaatttaaaaatg 50143137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 174
Target Start/End: Complemental strand, 5321969 - 5321924
Alignment:
Q  129 aataaatgtatcttgtaatttgaaaatgggcttatatttagggaca 174  Q
    ||||||||||||| |||||||||||| ||| ||| |||||||||||    
T  5321969 aataaatgtatctagtaatttgaaaaggggtttacatttagggaca 5321924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 108 - 141
Target Start/End: Complemental strand, 49320137 - 49320104
Alignment:
Q  108 gggtttatttggaaaagaaacaataaatgtatct 141  Q
    ||||||||||||||||||||||||||||||||||    
T  49320137 gggtttatttggaaaagaaacaataaatgtatct 49320104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 174
Target Start/End: Original strand, 31819499 - 31819607
Alignment:
Q  68 ttgacttttcatattccaagacact-tattggtattagtt-ggggtttatttggaaaagaaacaataaatgtatcttgtaatttgaaaatgggcttatat 165  Q
    ||||||||||||||| ||||||| | || | |||||| || ||||| | ||| | ||| ||| |||||||| |||| ||||||||||||| || ||||||    
T  31819499 ttgacttttcatatttcaagacaatatagtagtattaattaggggtatgtttaggaaaaaaataataaatgcatctagtaatttgaaaattgggttatat 31819598  T
Q  166 ttagggaca 174  Q
    |||||||||    
T  31819599 ttagggaca 31819607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 68 - 158
Target Start/End: Original strand, 13628276 - 13628363
Alignment:
Q  68 ttgacttttcatattccaagacacttattggtattagttggggtttatttggaaaagaaacaataaatgtatcttgtaatttgaaaatggg 158  Q
    ||||||| |||| |||||| | | |||||||||||| | ||||||||||||||||  ||| | ||||||||||| ||||||| ||||||||    
T  13628276 ttgacttctcattttccaaaatagttattggtattaataggggtttatttggaaa--aaatagtaaatgtatctagtaattt-aaaatggg 13628363  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 174
Target Start/End: Original strand, 21933082 - 21933127
Alignment:
Q  129 aataaatgtatcttgtaatttgaaaatgggcttatatttagggaca 174  Q
    |||||||| |||| |||||||||||||||| ||||||| |||||||    
T  21933082 aataaatgcatctagtaatttgaaaatgggtttatattcagggaca 21933127  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 174
Target Start/End: Complemental strand, 41739923 - 41739878
Alignment:
Q  129 aataaatgtatcttgtaatttgaaaatgggcttatatttagggaca 174  Q
    |||||||||| || |||||||||||||| | |||||||||||||||    
T  41739923 aataaatgtacctagtaatttgaaaatgagtttatatttagggaca 41739878  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 174
Target Start/End: Original strand, 44083783 - 44083828
Alignment:
Q  129 aataaatgtatcttgtaatttgaaaatgggcttatatttagggaca 174  Q
    |||||||| |||| |||||||||||||||| ||| |||||||||||    
T  44083783 aataaatggatctagtaatttgaaaatgggtttacatttagggaca 44083828  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 158
Target Start/End: Complemental strand, 44698471 - 44698442
Alignment:
Q  129 aataaatgtatcttgtaatttgaaaatggg 158  Q
    ||||||||||||||||||||||||||||||    
T  44698471 aataaatgtatcttgtaatttgaaaatggg 44698442  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 174
Target Start/End: Original strand, 39414328 - 39414436
Alignment:
Q  68 ttgacttttcatattccaagacac-ttattggtattagtt-ggggtttatttggaaaagaaacaataaatgtatcttgtaatttgaaaatgggcttatat 165  Q
    ||||||||||||||| ||||| |  ||| |||||||| || ||||| | ||| | ||| ||| ||||||||| ||| |||||||||||| ||| ||||||    
T  39414328 ttgacttttcatatttcaagataagttagtggtattaattaggggtatgtttaggaaaaaaataataaatgtgtctagtaatttgaaaaggggtttatat 39414427  T
Q  166 ttagggaca 174  Q
    |||||||||    
T  39414428 ttagggaca 39414436  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 174
Target Start/End: Complemental strand, 52198676 - 52198631
Alignment:
Q  129 aataaatgtatcttgtaatttgaaaatgggcttatatttagggaca 174  Q
    ||||||||||||| |||||||||||| ||| ||| |||||||||||    
T  52198676 aataaatgtatctagtaatttgaaaaggggtttacatttagggaca 52198631  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 168
Target Start/End: Original strand, 33221281 - 33221343
Alignment:
Q  107 ggggtttatttggaaaagaaacaataaatgtatcttg-taatttgaaaatgggcttatattta 168  Q
    |||||||||||| ||||||| ||||||| |||||| | ||||||||||||  |||||||||||    
T  33221281 ggggtttatttgaaaaagaagcaataaacgtatctagttaatttgaaaataagcttatattta 33221343  T

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