View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12447_low_5 (Length: 243)

Name: NF12447_low_5
Description: NF12447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12447_low_5
NF12447_low_5
[»] chr6 (3 HSPs)
chr6 (1-153)||(8639264-8639416)
chr6 (9-153)||(8684809-8684953)
chr6 (1-152)||(1297394-1297545)
[»] chr5 (3 HSPs)
chr5 (1-153)||(16781616-16781768)
chr5 (8-153)||(42689699-42689844)
chr5 (12-153)||(23946878-23947019)
[»] chr3 (4 HSPs)
chr3 (1-153)||(17716264-17716416)
chr3 (1-153)||(19017493-19017645)
chr3 (12-153)||(37145759-37145900)
chr3 (3-152)||(53606210-53606359)
[»] chr7 (3 HSPs)
chr7 (27-153)||(42604126-42604252)
chr7 (2-143)||(48953629-48953771)
chr7 (3-152)||(46831515-46831664)
[»] chr4 (4 HSPs)
chr4 (1-149)||(30961080-30961229)
chr4 (1-140)||(44567200-44567339)
chr4 (1-150)||(11240271-11240420)
chr4 (12-153)||(33806078-33806219)
[»] chr1 (2 HSPs)
chr1 (1-153)||(721631-721783)
chr1 (1-143)||(38880854-38880996)
[»] chr8 (1 HSPs)
chr8 (12-153)||(45210731-45210872)


Alignment Details
Target: chr6 (Bit Score: 105; Significance: 1e-52; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 8639264 - 8639416
Alignment:
Q  1 tcggaacatctctcttcatcacactttaagagagggaaatcaatgtacgaattactttcctaaattgggtgctattttagatgctcattttgtcgtccac 100  Q
    |||||||||||||||||||||| ||| ||||||||| ||||||||| |  |||||||| ||||||||||||||| || ||||||||||||| ||||||||    
T  8639264 tcggaacatctctcttcatcacgcttcaagagaggggaatcaatgtgcagattactttgctaaattgggtgctagttcagatgctcattttatcgtccac 8639363  T
Q  101 caatcgcctccagctgacctccttcctctgctaagagctgatgtgataggcac 153  Q
    |||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  8639364 caatcgcctccagctgacctccttcctctgcttagagctgatgcgataggcac 8639416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 9 - 153
Target Start/End: Original strand, 8684809 - 8684953
Alignment:
Q  9 tctctcttcatcacactttaagagagggaaatcaatgtacgaattactttcctaaattgggtgctattttagatgctcattttgtcgtccaccaatcgcc 108  Q
    |||||||||||||||| ||||||||||||||||||||| | | ||| ||| ||||||||||||| |||| ||||||||| ||||| ||||||||||||||    
T  8684809 tctctcttcatcacaccttaagagagggaaatcaatgtgcaatttattttgctaaattgggtgccatttcagatgctcagtttgttgtccaccaatcgcc 8684908  T
Q  109 tccagctgacctccttcctctgctaagagctgatgtgataggcac 153  Q
     ||| |||||||||||||| |||| |||||||||| ||| |||||    
T  8684909 cccaactgacctccttcctatgcttagagctgatgcgatgggcac 8684953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 1297545 - 1297394
Alignment:
Q  1 tcggaacatctctcttcatcacactttaagagagggaaatcaatgtacgaattactttcctaaattgggtgctattttagatgctcattttgtcgtccac 100  Q
    ||||||||| || || || |||||||||||||| || ||||||||| || | | || | ||||||| ||||||| || ||||| | || ||||||||||     
T  1297545 tcggaacatttccctccaccacactttaagagaagggaatcaatgtgcggacttctctgctaaatttggtgctaattcagatgttgatcttgtcgtccat 1297446  T
Q  101 caatcgcctccagctgacctccttcctctgctaagagctgatgtgataggca 152  Q
    || |||||||||||||| ||||| ||  |||| |||||||||| | ||||||    
T  1297445 cattcgcctccagctgatctcctccccatgcttagagctgatgcgctaggca 1297394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 97; Significance: 9e-48; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 16781616 - 16781768
Alignment:
Q  1 tcggaacatctctcttcatcacactttaagagagggaaatcaatgtacgaattactttcctaaattgggtgctattttagatgctcattttgtcgtccac 100  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||  | |||||||| ||||||||| ||||| |||||| |||||||||||| |||||    
T  16781616 tcggaacatctctcttcatcacaccttaagagaggggaatcaatgtgtggattactttgctaaattggatgctaatttagacgctcattttgtcctccac 16781715  T
Q  101 caatcgcctccagctgacctccttcctctgctaagagctgatgtgataggcac 153  Q
    |||||||||||||||||||||||||||||||| |||  ||||| |||||||||    
T  16781716 caatcgcctccagctgacctccttcctctgcttagaattgatgcgataggcac 16781768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 8 - 153
Target Start/End: Complemental strand, 42689844 - 42689699
Alignment:
Q  8 atctctcttcatcacactttaagagagggaaatcaatgtacgaattactttcctaaattgggtgctattttagatgctcattttgtcgtccaccaatcgc 107  Q
    |||||||| |||||||| ||||||||||| || |||||| || ||| |||| | || |||||||||| || ||||| |||| ||||||||||||||||||    
T  42689844 atctctctccatcacacattaagagaggggaaccaatgtgcggatttctttgccaagttgggtgctaattcagatgttcatcttgtcgtccaccaatcgc 42689745  T
Q  108 ctccagctgacctccttcctctgctaagagctgatgtgataggcac 153  Q
    | |||||||||||||| |||||||| ||||||||||  ||||||||    
T  42689744 cgccagctgacctcctccctctgcttagagctgatgctataggcac 42689699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 12 - 153
Target Start/End: Original strand, 23946878 - 23947019
Alignment:
Q  12 ctcttcatcacactttaagagagggaaatcaatgtacgaattactttcctaaattgggtgctattttagatgctcattttgtcgtccaccaatcgcctcc 111  Q
    |||| |||||||||||||||||||| || |||||| || ||| |||| | || |||||||||| || ||||| |||| |||||||||||||||| || ||    
T  23946878 ctctccatcacactttaagagaggggaaccaatgtgcggatttctttgccaagttgggtgctaattcagatgttcatcttgtcgtccaccaatcaccacc 23946977  T
Q  112 agctgacctccttcctctgctaagagctgatgtgataggcac 153  Q
    |||||||||||| |||||||| ||||||||||  ||||||||    
T  23946978 agctgacctcctccctctgcttagagctgatgctataggcac 23947019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 9e-48; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 17716416 - 17716264
Alignment:
Q  1 tcggaacatctctcttcatcacactttaagagagggaaatcaatgtacgaattactttcctaaattgggtgctattttagatgctcattttgtcgtccac 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| |  |||| ||| ||||||||||||| |||| ||||||||| ||||| ||||||    
T  17716416 tcggaacatctctcttcatcacaccttaagagagggaaatcaatgtgcagattattttgctaaattgggtgccatttcagatgctcagtttgttgtccac 17716317  T
Q  101 caatcgcctccagctgacctccttcctctgctaagagctgatgtgataggcac 153  Q
    |||||||| |||||||||||||||||| |||| |||||||||| |||||||||    
T  17716316 caatcgcccccagctgacctccttcctatgcttagagctgatgcgataggcac 17716264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 19017645 - 19017493
Alignment:
Q  1 tcggaacatctctcttcatcacactttaagagagggaaatcaatgtacgaattactttcctaaattgggtgctattttagatgctcattttgtcgtccac 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| |  |||| ||| ||||||||||||| |||| ||||||||| ||||| ||||||    
T  19017645 tcggaacatctctcttcatcacaccttaagagagggaaatcaatgtgcagattattttgctaaattgggtgccatttcagatgctcagtttgttgtccac 19017546  T
Q  101 caatcgcctccagctgacctccttcctctgctaagagctgatgtgataggcac 153  Q
    |||||||| |||||||||||||||||| |||| |||||||||| |||||||||    
T  19017545 caatcgcccccagctgacctccttcctatgcttagagctgatgcgataggcac 19017493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 12 - 153
Target Start/End: Original strand, 37145759 - 37145900
Alignment:
Q  12 ctcttcatcacactttaagagagggaaatcaatgtacgaattactttcctaaattgggtgctattttagatgctcattttgtcgtccaccaatcgcctcc 111  Q
    |||| |||||||| ||||||||||| || |||||| || ||| |||| | || |||||||||| || ||| | |||| ||||||||||||||| ||| ||    
T  37145759 ctctccatcacacattaagagaggggaaccaatgtgcggatttctttgccaagttgggtgctaattcagaagttcatcttgtcgtccaccaattgccgcc 37145858  T
Q  112 agctgacctccttcctctgctaagagctgatgtgataggcac 153  Q
    |||||||||||| |||||||| |||| |||||  ||||||||    
T  37145859 agctgacctcctccctctgcttagagatgatgctataggcac 37145900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 152
Target Start/End: Complemental strand, 53606359 - 53606210
Alignment:
Q  3 ggaacatctctcttcatcacactttaagagagggaaatcaatgtacgaattactttcctaaattgggtgctattttagatgctcattttgtcgtccacca 102  Q
    ||||||| || || || ||||||||||||||||| ||||||||| || | | |||| ||||||| ||||||| || |||||||  | |||||||||| ||    
T  53606359 ggaacatttccctccaccacactttaagagaggggaatcaatgtgcggacttctttgctaaatttggtgctaattcagatgctgctcttgtcgtccatca 53606260  T
Q  103 atcgcctccagctgacctccttcctctgctaagagctgatgtgataggca 152  Q
    ||||||||||||||| ||||| ||  |||| |||||||||| | ||||||    
T  53606259 atcgcctccagctgatctcctccccttgcttagagctgatgcgctaggca 53606210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 8e-42; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 27 - 153
Target Start/End: Complemental strand, 42604252 - 42604126
Alignment:
Q  27 taagagagggaaatcaatgtacgaattactttcctaaattgggtgctattttagatgctcattttgtcgtccaccaatcgcctccagctgacctccttcc 126  Q
    |||||||||||||||||||| || |||||||| |||||||||||||||||| ||||||||| ||||| |||||||||||||| |||||||||||||||||    
T  42604252 taagagagggaaatcaatgtgcggattactttgctaaattgggtgctatttcagatgctcagtttgttgtccaccaatcgcccccagctgacctccttcc 42604153  T
Q  127 tctgctaagagctgatgtgataggcac 153  Q
    | |||| |||||||||| |||||||||    
T  42604152 tatgcttagagctgatgcgataggcac 42604126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 2 - 143
Target Start/End: Original strand, 48953629 - 48953771
Alignment:
Q  2 cggaacatctctcttcatcacactttaagagagggaaatcaatgtacgaa-ttactttcctaaattgggtgctattttagatgctcattttgtcgtccac 100  Q
    |||||||||||||||||||||||| |||||||||| |||||| || | || ||  ||| ||||||| |  ||||||| ||||||| || ||||||||||     
T  48953629 cggaacatctctcttcatcacactctaagagaggggaatcaacgtgcaaactttttttgctaaattcgaagctatttcagatgctgatcttgtcgtccat 48953728  T
Q  101 caatcgcctccagctgacctccttcctctgctaagagctgatg 143  Q
    ||||||||| || |||| |||||||| ||||| ||||||||||    
T  48953729 caatcgcctacaactgatctccttcccctgcttagagctgatg 48953771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 152
Target Start/End: Original strand, 46831515 - 46831664
Alignment:
Q  3 ggaacatctctcttcatcacactttaagagagggaaatcaatgtacgaattactttcctaaattgggtgctattttagatgctcattttgtcgtccacca 102  Q
    ||||||| || || || ||||||||||||||||| ||||||||| || | | |||| ||||||| ||||||| || |||||||  | |||||||||| ||    
T  46831515 ggaacatttccctccaccacactttaagagaggggaatcaatgtgcggacttctttgctaaatttggtgctaattcagatgctgctcttgtcgtccatca 46831614  T
Q  103 atcgcctccagctgacctccttcctctgctaagagctgatgtgataggca 152  Q
    ||||||||||||||| ||||| ||  |||| |||||||||| | ||||||    
T  46831615 atcgcctccagctgatctcctccccttgcttagagctgatgcgctaggca 46831664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 86; Significance: 3e-41; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 30961229 - 30961080
Alignment:
Q  1 tcggaacatctctcttcatcacactttaagagagggaaatcaatgtacgaattactttcctaaattgggtgctattttagatgctcattttgtcgtcca- 99  Q
    |||||||||||||||||||||||| ||||||||||| || ||||||  | ||| |||| ||||||||||||||| || ||||||||||||||| || ||     
T  30961229 tcggaacatctctcttcatcacaccttaagagaggggaaccaatgtgtggatttctttgctaaattgggtgctaattcagatgctcattttgtagtgcac 30961130  T
Q  100 ccaatcgcctccagctgacctccttcctctgctaagagctgatgtgatag 149  Q
    ||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  30961129 ccattcgcctccagctgacctccttcctctgcttagagctgatgtgatag 30961080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 44567200 - 44567339
Alignment:
Q  1 tcggaacatctctcttcatcacactttaagagagggaaatcaatgtacgaattactttcctaaattgggtgctattttagatgctcattttgtcgtccac 100  Q
    |||||||||||||||||||||||| ||||||||||| ||| |||||    |||||||| ||||||| ||||||| || | |||||||| || ||||||||    
T  44567200 tcggaacatctctcttcatcacaccttaagagaggggaatgaatgtggagattactttactaaattaggtgctaattcatatgctcatcttatcgtccac 44567299  T
Q  101 caatcgcctccagctgacctccttcctctgctaagagctg 140  Q
    |||||| |||| |||| |||||||||||| || |||||||    
T  44567300 caatcgtctccggctgtcctccttcctcttcttagagctg 44567339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 11240271 - 11240420
Alignment:
Q  1 tcggaacatctctcttcatcacactttaagagagggaaatcaatgtacgaattactttcctaaattgggtgctattttagatgctcattttgtcgtccac 100  Q
    ||||||||||||||| |||||||| ||||||||||| || ||||||  | |||||||| ||||||| ||||||| || |||| ||||| |  |||| |||    
T  11240271 tcggaacatctctctccatcacaccttaagagaggggaaccaatgtttggattactttgctaaattaggtgctagttcagattctcatatgctcgttcac 11240370  T
Q  101 caatcgcctccagctgacctccttcctctgctaagagctgatgtgatagg 150  Q
    || ||||||| |||||||||| ||||||| || |||||||||| ||||||    
T  11240371 cattcgcctctagctgacctcattcctcttcttagagctgatgcgatagg 11240420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 12 - 153
Target Start/End: Original strand, 33806078 - 33806219
Alignment:
Q  12 ctcttcatcacactttaagagagggaaatcaatgtacgaattactttcctaaattgggtgctattttagatgctcattttgtcgtccaccaatcgcctcc 111  Q
    |||| |||||||| ||||||||||| || |||||| || ||| |||| | || |||||||||| || ||||| |||| |||||||||||||||| || ||    
T  33806078 ctctccatcacacattaagagaggggaaccaatgtgcggatttctttgccaagttgggtgctaattcagatgttcatcttgtcgtccaccaatcaccgcc 33806177  T
Q  112 agctgacctccttcctctgctaagagctgatgtgataggcac 153  Q
    |||||||||||| |||||||| ||||| ||||  ||||||||    
T  33806178 agctgacctcctccctctgcttagagcggatgctataggcac 33806219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 721631 - 721783
Alignment:
Q  1 tcggaacatctctcttcatcacactttaagagagggaaatcaatgtacgaattactttcctaaattgggtgctattttagatgctcattttgtcgtccac 100  Q
    ||||||| ||||||| |||||||| ||||||||||| |  |||||  || ||| |||| |||| |||||||||| || |||||||||| |||||||||||    
T  721631 tcggaacttctctctccatcacacattaagagaggggagccaatgcgcggatttctttgctaagttgggtgctaattcagatgctcatcttgtcgtccac 721730  T
Q  101 caatcgcctccagctgacctccttcctctgctaagagctgatgtgataggcac 153  Q
    ||||||||||||||||||||||| |||||||| ||||||||||  ||||||||    
T  721731 caatcgcctccagctgacctcctccctctgcttagagctgatgccataggcac 721783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 38880854 - 38880996
Alignment:
Q  1 tcggaacatctctcttcatcacactttaagagagggaaatcaatgtacgaattactttcctaaattgggtgctattttagatgctcattttgtcgtccac 100  Q
    ||||||||||||||| |||||||| |||||| || | || |||||  || ||| |||| |||| ||||||| || || |||||||||| |||||||||||    
T  38880854 tcggaacatctctctccatcacacattaagatagaggaaccaatgcgcggatttctttgctaagttgggtgttaattcagatgctcatcttgtcgtccac 38880953  T
Q  101 caatcgcctccagctgacctccttcctctgctaagagctgatg 143  Q
    ||||||||||||||||||||||| |||||||| ||| ||||||    
T  38880954 caatcgcctccagctgacctcctccctctgcttagaactgatg 38880996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 12 - 153
Target Start/End: Complemental strand, 45210872 - 45210731
Alignment:
Q  12 ctcttcatcacactttaagagagggaaatcaatgtacgaattactttcctaaattgggtgctattttagatgctcattttgtcgtccaccaatcgcctcc 111  Q
    |||| |||||||| ||||||||||| || |||||| || ||| |||| | || |||||||||| || ||||| |||| |||||||||||||||| || ||    
T  45210872 ctctccatcacacattaagagaggggaaccaatgtgcggatttctttgccaagttgggtgctaattcagatgttcatcttgtcgtccaccaatcaccgcc 45210773  T
Q  112 agctgacctccttcctctgctaagagctgatgtgataggcac 153  Q
    |||||||||||| |||||||| ||||||||||  ||||||||    
T  45210772 agctgacctcctccctctgcttagagctgatgctataggcac 45210731  T

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