View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12448_high_13 (Length: 322)
Name: NF12448_high_13
Description: NF12448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12448_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 33618923 - 33619233
Alignment:
| Q |
1 |
ttggtgctattgtgtttctactctgcaggttttggttggtcatggggtcctttaacatggcttattccaagtgagattttcccagtaaaaataagaacca |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33618923 |
ttggtgctattgtgtttctactctgcaggttttggttggtcatggggtccattaacatggcttattccaagtgagattttcccagtaaaaataagaacca |
33619022 |
T |
|
| Q |
101 |
caggacaaagcatagctgttgctgtgcaattcataataatctttgtgttatcgcaaacattcttgacaatgttatgccacatgaagttcggggccttcgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
33619023 |
caggacaaagcatagctgttgctgtgcaattcataataatctttgtgttatcgcaaacattcttgacaatgttatgccacatgaagtttggggccttcgt |
33619122 |
T |
|
| Q |
201 |
cttctatgctttttgggttattgtgatgactctgtttgttatcttcttcttgcctgagaccaaaggaattcctttggagtcaatgtacactatatggggc |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33619123 |
cttctatgctttttgggttattgtgatgactctgtttgttatcttcttcttgcctgagaccaaaggaattcctttggagtcaatgtacactatatggggc |
33619222 |
T |
|
| Q |
301 |
agacacaggtt |
311 |
Q |
| |
|
|||||| |||| |
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|
| T |
33619223 |
agacactggtt |
33619233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 33609641 - 33609938
Alignment:
| Q |
1 |
ttggtgctattgtgtttctactctgcaggttttggttggtcatggggtcctttaacatggcttattccaagtgagattttcccagtaaaaataagaacca |
100 |
Q |
| |
|
||||||||||| ||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
33609641 |
ttggtgctattatgtttatactctgctggttttggttggtcatggggtcctctaacatggcttattccaagtgagattttcccagtaaatataagaacca |
33609740 |
T |
|
| Q |
101 |
caggacaaagcatagctgttgctgtgcaattcataataatctttgtgttatcgcaaacattcttgacaatgttatgccacatgaagttcggggccttcgt |
200 |
Q |
| |
|
||||||||||||||||| ||||| | |||||||||||| | |||||| |||| ||||||||||||||||||||||| ||| | ||||| || |||||| | |
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| T |
33609741 |
caggacaaagcatagctattgctatacaattcataatagtatttgtgctatcacaaacattcttgacaatgttatgtcactttaagtttggagccttctt |
33609840 |
T |
|
| Q |
201 |
cttctatgctttttgggttattgtgatgactctgtttgttatcttcttcttgcctgagaccaaaggaattcctttggagtcaatgtacactatatggg |
298 |
Q |
| |
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||||||||| ||||||| |||||||||||| ||| |||| || |||||||||||||| ||||||||||||||||| ||||||||||| ||||||| |
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| T |
33609841 |
gttctatgctggttgggttgctgtgatgactctttttattatatttttcttgcctgagactaaaggaattcctttggattcaatgtacaccatatggg |
33609938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 33628126 - 33628424
Alignment:
| Q |
1 |
ttggtgctattgtgtttctactctgcaggttttggttggtcatggggtcctttaacatggcttattccaagtgagattttcccagtaaaaataagaacca |
100 |
Q |
| |
|
||||| ||| |||||||||| |||| |||||||||| ||| ||| ||||| |||||||||| ||||||| ||||||||| |||||||| ||||||| || |
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|
| T |
33628126 |
ttggtactaatgtgtttctatgctgcgggttttggtttgtcgtggagtcctctaacatggctaattccaactgagatttttccagtaaatataagaagca |
33628225 |
T |
|
| Q |
101 |
caggacaaagcatagctgttgctgtgcaattcataataatctttgtgttatcgcaaacattcttgacaatgttatgccacatgaagttcggggccttcgt |
200 |
Q |
| |
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| |||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||| |||||||||||| ||||||| ||||| || | |
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| T |
33628226 |
ctggacaaagcatagctgttgctgtgcatttcataatgatatttgtgttatcgcaaacattcttgactatgttatgccacttgaagtttggggcattttt |
33628325 |
T |
|
| Q |
201 |
cttctatgctttttgggttattgtgatgactctgtttgttatcttcttcttgcctgagaccaaaggaattcctttggagtcaatgtacactatatgggg |
299 |
Q |
| |
|
||||||||| ||||||| ||||||||||||| || |||| || || ||||| ||||| ||||||||| ||||||| |||||| ||| |||||||| |
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|
| T |
33628326 |
gttctatgctggttgggttgttgtgatgactcttttcattatattttttttgccggagactaaaggaattgctttggattcaatgcacatcatatgggg |
33628424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 13 - 301
Target Start/End: Original strand, 33596226 - 33596514
Alignment:
| Q |
13 |
tgtttctactctgcaggttttggttggtcatggggtcctttaacatggcttattccaagtgagattttcccagtaaaaataagaaccacaggacaaagca |
112 |
Q |
| |
|
||||||||| | ||||||||||||||||| |||||||| | || ||||| ||||||||||| |||||||| ||||||| ||||| || |||||||| | |
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|
| T |
33596226 |
tgtttctacgccgcaggttttggttggtcttggggtccactcacctggctaattccaagtgaaattttccccttaaaaatcagaacaactggacaaagta |
33596325 |
T |
|
| Q |
113 |
tagctgttgctgtgcaattcataataatctttgtgttatcgcaaacattcttgacaatgttatgccacatgaagttcggggccttcgtcttctatgcttt |
212 |
Q |
| |
|
|||| |||| ||| ||||||||||| | ||||||||||| |||||||||||||||||| |||||||| | ||||| || || ||| | |||||||| || |
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|
| T |
33596326 |
tagcagttggtgtacaattcataatcttgtttgtgttatcacaaacattcttgacaatgctatgccacttcaagtttggtgctttcttgttctatgcatt |
33596425 |
T |
|
| Q |
213 |
ttgggttattgtgatgactctgtttgttatcttcttcttgcctgagaccaaaggaattcctttggagtcaatgtacactatatggggca |
301 |
Q |
| |
|
||||||| ||||||||||| ||| | || ||||| ||||||||||||||||||||| |||||||||||||||| | ||||||||||| |
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|
| T |
33596426 |
ttgggttgcagtgatgactctatttatcattttctttttgcctgagaccaaaggaattgctttggagtcaatgtatattatatggggca |
33596514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 13 - 301
Target Start/End: Original strand, 33603357 - 33603645
Alignment:
| Q |
13 |
tgtttctactctgcaggttttggttggtcatggggtcctttaacatggcttattccaagtgagattttcccagtaaaaataagaaccacaggacaaagca |
112 |
Q |
| |
|
||||||||| | ||||||||||||||||| |||||||| | || ||||| ||||||||||| |||||||| ||||||| ||||| || |||||||| | |
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|
| T |
33603357 |
tgtttctacgccgcaggttttggttggtcttggggtccactcacctggctaattccaagtgaaattttccccttaaaaatcagaacaactggacaaagta |
33603456 |
T |
|
| Q |
113 |
tagctgttgctgtgcaattcataataatctttgtgttatcgcaaacattcttgacaatgttatgccacatgaagttcggggccttcgtcttctatgcttt |
212 |
Q |
| |
|
|||| |||| ||| ||||||||||| | ||||||||||| |||||||||||||||||| |||||||| | ||||| || || ||| | |||||||| || |
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|
| T |
33603457 |
tagcagttggtgtacaattcataatcttgtttgtgttatcacaaacattcttgacaatgctatgccacttcaagtttggtgctttcttgttctatgcatt |
33603556 |
T |
|
| Q |
213 |
ttgggttattgtgatgactctgtttgttatcttcttcttgcctgagaccaaaggaattcctttggagtcaatgtacactatatggggca |
301 |
Q |
| |
|
||||||| ||||||||||| ||| | || ||||| ||||||||||||||||||||| |||||||||||||||| | ||||||||||| |
|
|
| T |
33603557 |
ttgggttgcagtgatgactctatttatcattttctttttgcctgagaccaaaggaattgctttggagtcaatgtatattatatggggca |
33603645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 13 - 301
Target Start/End: Original strand, 33589054 - 33589342
Alignment:
| Q |
13 |
tgtttctactctgcaggttttggttggtcatggggtcctttaacatggcttattccaagtgagattttcccagtaaaaataagaaccacaggacaaagca |
112 |
Q |
| |
|
||||||||| | ||||||||||||||||| |||||||| | || ||||| ||||||||||| |||||||| ||||||| ||||| || |||||||| | |
|
|
| T |
33589054 |
tgtttctacgccgcaggttttggttggtcttggggtccactcacctggctaattccaagtgaaattttccccttaaaaatcagaacaactggacaaagta |
33589153 |
T |
|
| Q |
113 |
tagctgttgctgtgcaattcataataatctttgtgttatcgcaaacattcttgacaatgttatgccacatgaagttcggggccttcgtcttctatgcttt |
212 |
Q |
| |
|
|||| |||| ||| ||||||||||| | ||| ||||||| |||||||||||||||||| |||||||| | ||||| || || ||| | |||||||| || |
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|
| T |
33589154 |
tagcagttggtgtacaattcataatcttgtttatgttatcacaaacattcttgacaatgctatgccacttcaagtttggtgctttcttgttctatgcatt |
33589253 |
T |
|
| Q |
213 |
ttgggttattgtgatgactctgtttgttatcttcttcttgcctgagaccaaaggaattcctttggagtcaatgtacactatatggggca |
301 |
Q |
| |
|
||||||| ||||||||||| ||| | || ||||| ||||||||||||||||||||| |||||||||||||||| | ||||||||||| |
|
|
| T |
33589254 |
ttgggttgcagtgatgactctatttatcattttctttttgcctgagaccaaaggaattgctttggagtcaatgtatattatatggggca |
33589342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 11 - 284
Target Start/End: Original strand, 33563471 - 33563744
Alignment:
| Q |
11 |
tgtgtttctactctgcaggttttggttggtcatggggtcctttaacatggcttattccaagtgagattttcccagtaaaaataagaaccacaggacaaag |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || |||| | ||||||||||| ||||| || | ||||| ||||| || |||||||| |
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|
| T |
33563471 |
tgtgtttctactctgcaggttttggttggtcatggggtcctctattatggataattccaagtgaaatttttcctttgaaaatcagaacaactggacaaag |
33563570 |
T |
|
| Q |
111 |
catagctgttgctgtgcaattcataataatctttgtgttatcgcaaacattcttgacaatgttatgccacatgaagttcggggccttcgtcttctatgct |
210 |
Q |
| |
|
||||||| || ||||||||||||||| || |||||||| || || |||||||||||||||||||| ||| |||||| || || ||| | ||| || | |
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|
| T |
33563571 |
catagctatttctgtgcaattcataactatatttgtgttgtctcagacattcttgacaatgttatgtcacttgaagtatggtgctttcttgttccatagt |
33563670 |
T |
|
| Q |
211 |
ttttgggttattgtgatgactctgtttgttatcttcttcttgcctgagaccaaaggaattcctttggagtcaat |
284 |
Q |
| |
|
|||| || |||| ||||| || ||| |||| |||| |||||||| ||||||||| ||| |||||| ||||| |
|
|
| T |
33563671 |
gcttggattgttgtcatgaccctctttattatactcttgttgcctgaaaccaaaggacttcatttggattcaat |
33563744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 53 - 179
Target Start/End: Original strand, 33623791 - 33623917
Alignment:
| Q |
53 |
taacatggcttattccaagtgagattttcccagtaaaaataagaaccacaggacaaagcatagctgttgctgtgcaattcataataatctttgtgttatc |
152 |
Q |
| |
|
|||||||||| ||||||| |||||||||||| | | ||| ||| || |||||||||||||||||| |||||| |||||||| |||||||| |||| |
|
|
| T |
33623791 |
taacatggctaattccaactgagattttccccatttatataggaagcattcgacaaagcatagctgttgttgtgcatttcataatggtctttgtgctatc |
33623890 |
T |
|
| Q |
153 |
gcaaacattcttgacaatgttatgcca |
179 |
Q |
| |
|
||||||||||||||| ||||||||||| |
|
|
| T |
33623891 |
gcaaacattcttgactatgttatgcca |
33623917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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