View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12448_high_4 (Length: 525)
Name: NF12448_high_4
Description: NF12448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12448_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 389; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 515
Target Start/End: Original strand, 3881424 - 3881945
Alignment:
| Q |
1 |
ggactctgctccttgtattggctcccaaatttaaccctgcttgatttatcatacactttcttggtgactctgcagcctgtttttgactcttgtaaacaac |
100 |
Q |
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| T |
3881424 |
ggaccctgctccttgtattggctcccaaatttaaccctgcttgatttatcatacactttcttggtgactctgcagcctgtttttgactcttgtaaacaac |
3881523 |
T |
|
| Q |
101 |
ttaaggtaaaag-catcatcttttagttcacatgttttt-actgtctagcatattacagattgtataatagtagcggagaacc--tcctcccatcctcaa |
196 |
Q |
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| T |
3881524 |
taaaggtaaaaaacattatattttagtttacatattttttactgtcttgcaaattacaaatagtataatagtagtgaagaaccgctcctcccatcctcaa |
3881623 |
T |
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| Q |
197 |
aacaaatctccagaagtggtggttatttagtttgataaacctagcgaagttgtgatgttatactaccatacacacagaagttgttcagaagagcttattt |
296 |
Q |
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| T |
3881624 |
aacaaatctccagaagtggtggttatttagtttgataaacctagcgaagttgtgatgttatactaccatacacacagaagttgttcagaagagcttattt |
3881723 |
T |
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| Q |
297 |
gtgtctatctcgtgtttaaataattatattattaatgtttttggattt--nnnnnnnnncatttatttcatttttcatcgtttcctg-ttctgcaacaat |
393 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |
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| T |
3881724 |
gtgtctatctcgtgtttaaatacttatattattaatgtttttggatttaaaaaaaaaaacatttatttcatttttcatcgtttcctgcttctgcaacaat |
3881823 |
T |
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| Q |
394 |
gaagacacagaaattggctggaaaatggagatagaaggggactgaaaagagagaggaaaaagtgggcaaaactcctaacattattttgtttaatgagtta |
493 |
Q |
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| T |
3881824 |
gaagacgcagaaattggctggaaaatggagatagaaggggactgaaaagagagaggaaaaagtgggcaaaactcctaacattattttgtttaatgagtta |
3881923 |
T |
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| Q |
494 |
ctcattccttggtccacaggtt |
515 |
Q |
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| T |
3881924 |
ctcattccttggtccacaggtt |
3881945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 3867665 - 3867896
Alignment:
| Q |
1 |
ggactctgctccttgtattggctcccaaatttaaccctgcttgatttatcatacactttcttggtgactctgcagcctgtttttgactcttgtaaacaac |
100 |
Q |
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|||||||| ||| || ||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |
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| T |
3867665 |
ggactctgttccctgcattggctcccaaatttagctctgcttgatttatcatacactttcctggtgactctgcagcctgtttttgattcttgtaaacaac |
3867764 |
T |
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| Q |
101 |
ttaaggt-aaaagcatcatcttttagttcacat-gtttttactgtctagcatattacagattgtataatagtagcggagaac--ctcctcccatcctcaa |
196 |
Q |
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| T |
3867765 |
taaaggtaaaaaacattatattttagtttacatattttttactgtcttgcaaattacaaatagtataatagtagtgaagaaccgctcctcccatcctcaa |
3867864 |
T |
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| Q |
197 |
aacaaatctccagaagtggtggttatttagtt |
228 |
Q |
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| T |
3867865 |
aacaaatctacggaagtgagggttatttagtt |
3867896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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