View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12448_high_6 (Length: 408)
Name: NF12448_high_6
Description: NF12448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12448_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 16 - 400
Target Start/End: Complemental strand, 38575082 - 38574698
Alignment:
| Q |
16 |
caaccatcacctttattaatgggataatcatactcaccccaaataggatgaggcaataactgaactatctcttgtgcttgaggattactataaggatcac |
115 |
Q |
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| T |
38575082 |
caaccatcacctttattaatgggataaccatactcaccccaaataggatgaggcaataactgaactatctcttgtgcttgaggattactataaggatcac |
38574983 |
T |
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| Q |
116 |
aagtactaacaggttgctctaaatgttgagcattgcctggagcacagtaatagtgataagctgaataagggaaattggtagtgtcatttctgaatatctt |
215 |
Q |
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| T |
38574982 |
aagtactaacaggttgctctaaatgttgagcattgcctggagcacagtaatagtgataagctgaataagggaaattggcagtgtcatttctgaatatctt |
38574883 |
T |
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| Q |
216 |
tttgttatccggtgtgatatgaaatggtggacaatttcctaaacctgtagggctacaccaagctggagtttctggattgatgatcatttcactgtatcta |
315 |
Q |
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| T |
38574882 |
tttgttatctggtgtgatatgaaatggtggacaatttcctaaacctgtagggctacaccaagctggagtttctggattgatgatcatttcactgtatcta |
38574783 |
T |
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| Q |
316 |
gtgacatcagttagtacatctccaccacaaggtgcaccattgttcttccaacaacttcccatgtctagaaggtagaattggctct |
400 |
Q |
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| T |
38574782 |
gtgacatcagttagtacatctccatcacaaggtgcaccattgttcttccaacaacttcccatgtctagaaggtagaattggctct |
38574698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 352 - 399
Target Start/End: Original strand, 30817996 - 30818043
Alignment:
| Q |
352 |
ccattgttcttccaacaacttcccatgtctagaaggtagaattggctc |
399 |
Q |
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| T |
30817996 |
ccattgttcttccaacaacttcccatgtccatgaggtagaattggctc |
30818043 |
T |
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