View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12448_high_8 (Length: 386)
Name: NF12448_high_8
Description: NF12448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12448_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 19 - 377
Target Start/End: Complemental strand, 19419142 - 19418784
Alignment:
| Q |
19 |
acttcgccgtcatctcgtgccgtgtaagattgtgtggaatgatttggttgtgttagaggaaggaacgttgatttggacttatcaaagagatttcacattg |
118 |
Q |
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| T |
19419142 |
acttcgccgtcatctcgtgccgtgtaagattgtgtggaatgatttggttgtgttagaggaaggaacgttgatttggacttatcaaagagatttcacattg |
19419043 |
T |
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| Q |
119 |
aatgtgaaaactagtgctggtagtgatttgtttttgcttaataatggtgttcctgtggtttttccggatttgtatgtaagtgattggcttgttgttcatg |
218 |
Q |
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| T |
19419042 |
aatgtgaaaactagtgctggtagtgatttgtttttgcttaataatggtgttcctgtggtttttccggatttgtatgtcagtgattggcttgttgttcatg |
19418943 |
T |
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| Q |
219 |
gaatcggagatattcttttggatactgttagatcagaagaagtttcagttcaggatgcagaatctactaaatttgagattgatcatcatcatcaccgtca |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
19418942 |
gaatcggagatattcttttggatactgttagatcagaagaagtttcagttcaggatgcagaatctactacatttgagattgatcatcatcatcaccgtca |
19418843 |
T |
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| Q |
319 |
ccgtgatcatcgtattcatgatcgtgcgtataatcctgctgaacattctcacttctctg |
377 |
Q |
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| T |
19418842 |
ccgtgatcatcgtattcatgatcgtgcgtataatcctgcagaacattctcacttctctg |
19418784 |
T |
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