View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12448_low_12 (Length: 352)
Name: NF12448_low_12
Description: NF12448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12448_low_12 |
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| [»] scaffold0334 (2 HSPs) |
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Alignment Details
Target: scaffold0334 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: scaffold0334
Description:
Target: scaffold0334; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 23 - 240
Target Start/End: Complemental strand, 16686 - 16469
Alignment:
| Q |
23 |
caaacaccaaacaatagcgcaaacaatgaaaatatatggattatatggcacacgtactcagcaataacaattgttatatgctcagccccgcaacaatgga |
122 |
Q |
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| T |
16686 |
caaacaccaaacagtagcgcaaacaatgaaaatatatggattatatggcacacgtactcaacaataacaattgttatatgctcagtcccgcaacaatgga |
16587 |
T |
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| Q |
123 |
acagccaacaacaacaattcaatttaattaaataaaagaaagaaaagggacgtagcagcagctttgaaaataaagggaatttggattggtaagtgctgca |
222 |
Q |
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| T |
16586 |
acagccaacaacaacaattcaatttaattaaataaaagaaagaaaagggacgtagcagcaactttgaaaataaagggaatttggattggtaagtgctgca |
16487 |
T |
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| Q |
223 |
aaataaaatcgggttgag |
240 |
Q |
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|||||||||||||||||| |
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| T |
16486 |
aaataaaatcgggttgag |
16469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0334; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 310 - 343
Target Start/End: Complemental strand, 16399 - 16366
Alignment:
| Q |
310 |
tggattgctgaacgaaaatagaacacaggttctg |
343 |
Q |
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| T |
16399 |
tggattgctgaacgaaaatagaacacaggttctg |
16366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 23 - 240
Target Start/End: Original strand, 11177298 - 11177497
Alignment:
| Q |
23 |
caaacaccaaacaatagcgcaaacaatgaaaatatatggattatatggcacacgtactcagcaataacaattgttatatgctcagccccgcaacaatgga |
122 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
11177298 |
caaacaccaaacagtagcgcaaacaatgaaaatatatggattatatggcacacgtactcagcaataacaattgttatatactcagcccagcaac------ |
11177391 |
T |
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| Q |
123 |
acagccaacaacaacaattcaatttaattaaataaaagaaagaaaagggacgtagcagcagctttgaaaataaagggaatttggattggtaagtgctgca |
222 |
Q |
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| T |
11177392 |
------------aacaattcaatttaattaaataaaagaaagaaaagggacgtagcagcagctttgaaaataaagggaatttggattggtaagtgctgca |
11177479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 310 - 343
Target Start/End: Original strand, 11177567 - 11177600
Alignment:
| Q |
310 |
tggattgctgaacgaaaatagaacacaggttctg |
343 |
Q |
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| T |
11177567 |
tggattgctgaacgaaaatagaacacaggttctg |
11177600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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