View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12448_low_13 (Length: 348)
Name: NF12448_low_13
Description: NF12448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12448_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 4 - 337
Target Start/End: Original strand, 48965700 - 48966032
Alignment:
| Q |
4 |
accacacatgtgatctgacctttctacattttctgattcactacatatgatgtttgcatcattgttttgttggcttttgcatttgatcattcaacattgc |
103 |
Q |
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| T |
48965700 |
accacacatgtgatctgacctttctacattttctgattaactacatatgatgtttgctacattgttttgttggcttt-gcattggatcattcaacattgc |
48965798 |
T |
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| Q |
104 |
atctgtttactaaaacaaaaatcacaaacactgataatgaatgttaattagtctaatttaagaaccagcaatagcagcaatgcctggtgctctttcgtaa |
203 |
Q |
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| T |
48965799 |
atctgtttactaaaaagaaaatcacaaacactaataatgaatgttaattagtataatttaagaaccagcaatagcagcaatgcctggtgctctttcttaa |
48965898 |
T |
|
| Q |
204 |
gagcaacaaactgtgatgtgaggccaaatggttataattggcttccatggagctcttcttttctaaaatcatatagcaacctgatgtggctgcaatccaa |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48965899 |
gagcaacaaactgtgatgtgaggccaaatggttataattggcttccatggagctcttcttttctaaaatcatatagcaacctgatgtggctgcaatccaa |
48965998 |
T |
|
| Q |
304 |
gctctcttgccagtggtaatttcttcacaggttc |
337 |
Q |
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|||||||||||||| |||||||||| |||||||| |
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| T |
48965999 |
gctctcttgccagttgtaatttctttacaggttc |
48966032 |
T |
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