View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12448_low_14 (Length: 343)
Name: NF12448_low_14
Description: NF12448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12448_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 16 - 289
Target Start/End: Complemental strand, 8186837 - 8186563
Alignment:
| Q |
16 |
catgatgattatccttttgtagtcaatggttcgagaggacttttaactttcaataaagagg---tatttaacaacatattcaagagaaaaacaaaatagt |
112 |
Q |
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| T |
8186837 |
catgatgattatccttttgtagtcaatggttcgagaggacttttaactttcaataaagaggaggtatttaacaacatattcaagagaaaaacaaaatagt |
8186738 |
T |
|
| Q |
113 |
atgactaattctttctcaatgcgactaactcaaagtgtgggtgggcttagaactaagtcaatgcatagtgggactcgtaacatgtaannnnnnnnnatat |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |
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| T |
8186737 |
atgactaattctttctcaatgcgactaactcaaagtgtgggtgggcttagaactaagtcaatgcatagtggaactcgtaacatgtaa-ttttttttata- |
8186640 |
T |
|
| Q |
213 |
tatttattaataactaaatcatgtttagtgtttttgtatatttgttagtgacaagtacttatcccgcgtttcattat |
289 |
Q |
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||||||||||||||||| ||||||| || ||||||||||||||||||||||||| ||||||||| |||||||||||| |
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| T |
8186639 |
tatttattaataactaattcatgttcagcgtttttgtatatttgttagtgacaaatacttatcctgcgtttcattat |
8186563 |
T |
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