View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12448_low_15 (Length: 327)
Name: NF12448_low_15
Description: NF12448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12448_low_15 |
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| [»] scaffold0334 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 181; Significance: 9e-98; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 23 - 215
Target Start/End: Original strand, 11177305 - 11177497
Alignment:
| Q |
23 |
caaacagtagcgcaaacaacgaaaatatatggattatatggcacacgtactcagcaataacaattgttatatgctcagccccgcaacaacaattcaattt |
122 |
Q |
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| T |
11177305 |
caaacagtagcgcaaacaatgaaaatatatggattatatggcacacgtactcagcaataacaattgttatatactcagcccagcaacaacaattcaattt |
11177404 |
T |
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| Q |
123 |
aattaaataaaagaaagaaaagggacgtagcagcagctttgaaaataaagggaatttggattggtaagtgctgcaaaataaaatcgggttgag |
215 |
Q |
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| T |
11177405 |
aattaaataaaagaaagaaaagggacgtagcagcagctttgaaaataaagggaatttggattggtaagtgctgcaaaataaaatcgggttgag |
11177497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 285 - 318
Target Start/End: Original strand, 11177567 - 11177600
Alignment:
| Q |
285 |
tggattgctgaacgaaaatagaacacaggttctg |
318 |
Q |
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| T |
11177567 |
tggattgctgaacgaaaatagaacacaggttctg |
11177600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0334 (Bit Score: 136; Significance: 6e-71; HSPs: 2)
Name: scaffold0334
Description:
Target: scaffold0334; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 23 - 215
Target Start/End: Complemental strand, 16679 - 16469
Alignment:
| Q |
23 |
caaacagtagcgcaaacaacgaaaatatatggattatatggcacacgtactcagcaataacaattgttatatgctcagccccgcaacaa----------- |
111 |
Q |
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| T |
16679 |
caaacagtagcgcaaacaatgaaaatatatggattatatggcacacgtactcaacaataacaattgttatatgctcagtcccgcaacaatggaacagcca |
16580 |
T |
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| Q |
112 |
-------caattcaatttaattaaataaaagaaagaaaagggacgtagcagcagctttgaaaataaagggaatttggattggtaagtgctgcaaaataaa |
204 |
Q |
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| T |
16579 |
acaacaacaattcaatttaattaaataaaagaaagaaaagggacgtagcagcaactttgaaaataaagggaatttggattggtaagtgctgcaaaataaa |
16480 |
T |
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| Q |
205 |
atcgggttgag |
215 |
Q |
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| T |
16479 |
atcgggttgag |
16469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0334; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 285 - 318
Target Start/End: Complemental strand, 16399 - 16366
Alignment:
| Q |
285 |
tggattgctgaacgaaaatagaacacaggttctg |
318 |
Q |
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| T |
16399 |
tggattgctgaacgaaaatagaacacaggttctg |
16366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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