View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12448_low_20 (Length: 247)
Name: NF12448_low_20
Description: NF12448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12448_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 235
Target Start/End: Original strand, 3613910 - 3614127
Alignment:
| Q |
18 |
aatgttatcggtctgtttgggctacttcacctcaataaggatcgcacattctgttataatgatctgaatatgaaccgtatttgtacttcatggcttaata |
117 |
Q |
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| T |
3613910 |
aatgttatcggtctgtttgggctacttcacctcaataaggatcgcacattctgttataatgatctgaatatgaaccgtatttgtacttcatggcttaata |
3614009 |
T |
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| Q |
118 |
ccttggattctattacaacaaagagaatgcataatgagattcttaatcaaaaagaagcactttgtaggattgttgcacatccatttggattagcacaaac |
217 |
Q |
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| T |
3614010 |
ccttggattctattacaacaaagagaatgcataatgagattcttaatcaaaaagaagcactttgtaggattgttgcacatccatttggattagcacaaac |
3614109 |
T |
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| Q |
218 |
atactggcttgcacaggt |
235 |
Q |
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| T |
3614110 |
atactggcttgcacaggt |
3614127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 22 - 235
Target Start/End: Original strand, 14757737 - 14757950
Alignment:
| Q |
22 |
ttatcggtctgtttgggctacttcacctcaataaggatcgcacattctgttataatgatctgaatatgaaccgtatttgtacttcatggcttaatacctt |
121 |
Q |
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| T |
14757737 |
ttattggtctgtttgggctatttcacctcaataaggatcacacattctgtaataacgatccgattatgaatcgtatttgtacttcatggcttaatacctt |
14757836 |
T |
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| Q |
122 |
ggattctattacaacaaagagaatgcataatgagattcttaatcaaaaagaagcactttgtaggattgttgcacatccatttggattagcacaaacatac |
221 |
Q |
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| T |
14757837 |
ggattctattacaacaaagacaatgcagaatgagattcttaaacagaaagaagcactttgtagaattgctgcacatccatttggactagcacaaacatac |
14757936 |
T |
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| Q |
222 |
tggcttgcacaggt |
235 |
Q |
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| T |
14757937 |
tggcttgcacaggt |
14757950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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