View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12448_low_3 (Length: 678)

Name: NF12448_low_3
Description: NF12448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12448_low_3
NF12448_low_3
[»] chr3 (15 HSPs)
chr3 (20-661)||(33618304-33618945)
chr3 (60-350)||(33609169-33609459)
chr3 (40-352)||(33627539-33627851)
chr3 (30-239)||(33588423-33588632)
chr3 (30-239)||(33595595-33595804)
chr3 (30-239)||(33602726-33602935)
chr3 (549-661)||(33609551-33609663)
chr3 (553-658)||(33628040-33628145)
chr3 (564-657)||(33623664-33623757)
chr3 (48-185)||(33622521-33622658)
chr3 (587-669)||(33588990-33589072)
chr3 (587-669)||(33596162-33596244)
chr3 (587-669)||(33603293-33603375)
chr3 (280-346)||(33622758-33622824)
chr3 (91-157)||(33562979-33563045)
[»] chr1 (2 HSPs)
chr1 (420-478)||(19908043-19908102)
chr1 (429-474)||(43240391-43240437)
[»] chr7 (1 HSPs)
chr7 (429-475)||(38900181-38900227)
[»] chr4 (1 HSPs)
chr4 (430-475)||(51811290-51811335)


Alignment Details
Target: chr3 (Bit Score: 622; Significance: 0; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 622; E-Value: 0
Query Start/End: Original strand, 20 - 661
Target Start/End: Original strand, 33618304 - 33618945
Alignment:
Q  20 agaacttatcaagtggacagaaattgcgaaatcagtgcaacaagagccctttaaaaccatattaaaaagggaatatcgacctcacttggtgatggcattt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33618304 agaacttatcaagtggacagaaattgcgaaatcagtgcaacaagagccctttaaaaccatattaaaaagggaatatcgacctcacttggtgatggcattt 33618403  T
Q  120 gcaatcccgtttttccaacagcttacagggatcaacattgtagccttttattcacccaacctctttcactctgtgggttttggacacgacggagctttac 219  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33618404 gcaatcccgtttttccaacagcttacagggatcaatattgtagccttttattcacccaacctctttcactctgtgggttttggacacgacggagctttac 33618503  T
Q  220 tttccgccattatacttggatctgttagccttttgtctaaccttatctctgctggtattgttgatcgaattggtcgaagattcttgttcatatctggggg 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33618504 tttccgccattatacttggatctgttagccttttgtctaaccttatctctgctggtattgttgatcgaattggtcgaagattcttgttcatatctggggg 33618603  T
Q  320 aattatgatgcttgtctgcttggtaagcgaactaaacctatctatccttttgttagctaatatattttgtgtccctatgaaatatatttttaagttgttt 419  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  33618604 aattatgatgcttgtctgcttggtaagcgaactaaacctatctatctttttgttagttaatatattttgtgtccctatgaaatatatttttaagttgttt 33618703  T
Q  420 aacatcattgcgtcattttattcatgcagccgactcacttagtgggataaggcttgattattgcttttaagctatttaacattttttatttagttccact 519  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33618704 aacatcattgcgtcattttattcatgcagccaactcacttagtgggataaggcttgattattgcttttaagctatttaacattttttatttagttccact 33618803  T
Q  520 tgttactaattaaaatactttgtctcaaaaatgtgaagattgctgtgtccattgtcctggcagtggtgactggtgttgatggtacaaaggacatatccaa 619  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33618804 tgttactaattaaaatactttgtctcaacaatgtgaagattgctgtgtccattgtcctggcagtggtgactggtgttgatggtacaaaggacatatccaa 33618903  T
Q  620 gggcaatgcaatagtggtattggtgctattgtgtttctactc 661  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  33618904 gggcaatgcaatagtggtattggtgctattgtgtttctactc 33618945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 60 - 350
Target Start/End: Original strand, 33609169 - 33609459
Alignment:
Q  60 caagagccctttaaaaccatattaaaaagggaatatcgacctcacttggtgatggcatttgcaatcccgtttttccaacagcttacagggatcaacattg 159  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| |    
T  33609169 caagagccctttaaaaccatattaaaaagggagtatcgacctcacttggtgatggcatttgcaatcccatttttccaacaacttaccgggatcaacatcg 33609268  T
Q  160 tagccttttattcacccaacctctttcactctgtgggttttggacacgacggagctttactttccgccattatacttggatctgttagccttttgtctaa 259  Q
    | || || |||||||| |||||||| || |||||||| || ||||  ||||| |||||| ||||||||||| |||||||||| ||||||||| |||||||    
T  33609269 tcgctttctattcacctaacctcttccattctgtgggcttgggacgtgacggcgctttaatttccgccattgtacttggatccgttagccttgtgtctaa 33609368  T
Q  260 ccttatctctgctggtattgttgatcgaattggtcgaagattcttgttcatatctgggggaattatgatgcttgtctgcttggtaagcgaa 350  Q
    | |||||||||| ||||||||||||||| |||||||||||||| |||||||| ||||||| ||||||||| ||||||||||||||||||||    
T  33609369 cgttatctctgccggtattgttgatcgatttggtcgaagattcctgttcataactgggggtattatgatgtttgtctgcttggtaagcgaa 33609459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 40 - 352
Target Start/End: Original strand, 33627539 - 33627851
Alignment:
Q  40 aaattgcgaaatcagtgcaacaagagccctttaaaaccatattaaaaagggaatatcgacctcacttggtgatggcatttgcaatcccgtttttccaaca 139  Q
    ||||||| |||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||  | |||||||||||||| |||||    
T  33627539 aaattgcaaaatcactgcaacaagagccctttaaaaccatattcaaaagggagtatcgacctcacttggtaatggcgatagcaatcccgttttttcaaca 33627638  T
Q  140 gcttacagggatcaacattgtagccttttattcacccaacctctttcactctgtgggttttggacacgacggagctttactttccgccattatacttgga 239  Q
      ||||||||||||||||| | || || |||||||| |||||||||   ||| |||| || |||||| | |   |||||||||| || |||||||||||     
T  33627639 agttacagggatcaacattattgctttctattcacctaacctctttagatctttggggttgggacacaatgcttctttactttctgcgattatacttggc 33627738  T
Q  240 tctgttagccttttgtctaaccttatctctgctggtattgttgatcgaattggtcgaagattcttgttcatatctgggggaattatgatgcttgtctgct 339  Q
      ||||| ||||   |||| |||  ||||| ||  | || |||||||| ||||||||||||||||||||||  ||||||| ||||| ||| |||||||||    
T  33627739 gttgttaaccttgcatctatcctcgtctcttctactgttattgatcgatttggtcgaagattcttgttcattactgggggtattatcatgtttgtctgct 33627838  T
Q  340 tggtaagcgaact 352  Q
    ||||||| |||||    
T  33627839 tggtaagtgaact 33627851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 30 - 239
Target Start/End: Original strand, 33588423 - 33588632
Alignment:
Q  30 aagtggacagaaattgcgaaatcagtgcaacaagagccctttaaaaccatattaaaaagggaatatcgacctcacttggtgatggcatttgcaatcccgt 129  Q
    ||||||||||||||| ||||| |||||||||||||||| ||||  ||||||||| | ||  ||||||||||||||||||| ||||||||| ||||||| |    
T  33588423 aagtggacagaaatttcgaaagcagtgcaacaagagccatttatgaccatattagagagacaatatcgacctcacttggtcatggcattttcaatcccat 33588522  T
Q  130 ttttccaacagcttacagggatcaacattgtagccttttattcacccaacctctttcactctgtgggttttggacacgacggagctttactttccgccat 229  Q
    |||| |||||| ||||||||||||||||||| || || |||||||| ||||||||||| ||||||||||| ||| || |||| ||||||||||| ||| |    
T  33588523 tttttcaacagtttacagggatcaacattgtcgctttctattcaccaaacctctttcaatctgtgggtttaggaaacaacggtgctttactttctgccgt 33588622  T
Q  230 tatacttgga 239  Q
    ||| ||||||    
T  33588623 tattcttgga 33588632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 30 - 239
Target Start/End: Original strand, 33595595 - 33595804
Alignment:
Q  30 aagtggacagaaattgcgaaatcagtgcaacaagagccctttaaaaccatattaaaaagggaatatcgacctcacttggtgatggcatttgcaatcccgt 129  Q
    ||||||||||||||| ||||| |||||||||||||||| ||||  ||||||||  | ||  ||||||||||||||||||| ||||||||| ||||||| |    
T  33595595 aagtggacagaaatttcgaaagcagtgcaacaagagccatttatgaccatatttgagagacaatatcgacctcacttggtcatggcattttcaatcccat 33595694  T
Q  130 ttttccaacagcttacagggatcaacattgtagccttttattcacccaacctctttcactctgtgggttttggacacgacggagctttactttccgccat 229  Q
    |||| |||||| ||||||||||||||||||| || || |||||||| ||||||||||| ||||||||||| ||| || |||| ||||||||||| ||| |    
T  33595695 tttttcaacagtttacagggatcaacattgtcgctttctattcaccaaacctctttcaatctgtgggtttaggaaacaacggtgctttactttctgccgt 33595794  T
Q  230 tatacttgga 239  Q
    ||| ||||||    
T  33595795 tattcttgga 33595804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 30 - 239
Target Start/End: Original strand, 33602726 - 33602935
Alignment:
Q  30 aagtggacagaaattgcgaaatcagtgcaacaagagccctttaaaaccatattaaaaagggaatatcgacctcacttggtgatggcatttgcaatcccgt 129  Q
    ||||||||||||||| ||||| |||||||||||||||| ||||  ||||||||  | ||  ||||||||||||||||||| ||||||||| ||||||| |    
T  33602726 aagtggacagaaatttcgaaagcagtgcaacaagagccatttatgaccatatttgagagacaatatcgacctcacttggtcatggcattttcaatcccat 33602825  T
Q  130 ttttccaacagcttacagggatcaacattgtagccttttattcacccaacctctttcactctgtgggttttggacacgacggagctttactttccgccat 229  Q
    |||| |||||| ||||||||||||||||||| || || |||||||| ||||||||||| ||||||||||| ||| || |||| ||||||||||| ||| |    
T  33602826 tttttcaacagtttacagggatcaacattgtcgctttctattcaccaaacctctttcaatctgtgggtttaggaaacaacggtgctttactttctgccgt 33602925  T
Q  230 tatacttgga 239  Q
    ||| ||||||    
T  33602926 tattcttgga 33602935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 549 - 661
Target Start/End: Original strand, 33609551 - 33609663
Alignment:
Q  549 aatgtgaagattgctgtgtccattgtcctggcagtggtgactggtgttgatggtacaaaggacatatccaagggcaatgcaatagtggtattggtgctat 648  Q
    |||||||||||||||||||||||||| || ||||||||| |||||||||| |||||||| |||||||||||||| ||||||||| | |||||||||||||    
T  33609551 aatgtgaagattgctgtgtccattgtgctagcagtggtgtctggtgttgacggtacaaacgacatatccaaggggaatgcaatattagtattggtgctat 33609650  T
Q  649 tgtgtttctactc 661  Q
    | ||||| |||||    
T  33609651 tatgtttatactc 33609663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 553 - 658
Target Start/End: Original strand, 33628040 - 33628145
Alignment:
Q  553 tgaagattgctgtgtccattgtcctggcagtggtgactggtgttgatggtacaaaggacatatccaagggcaatgcaatagtggtattggtgctattgtg 652  Q
    ||||| |||| ||||||||||| || |||||||| |||||||||||||||||||| |||||||| ||||||||||||||| |||||||||| ||| ||||    
T  33628040 tgaagcttgcggtgtccattgtgctagcagtggtaactggtgttgatggtacaaatgacatatcaaagggcaatgcaatattggtattggtactaatgtg 33628139  T
Q  653 tttcta 658  Q
    ||||||    
T  33628140 tttcta 33628145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 564 - 657
Target Start/End: Original strand, 33623664 - 33623757
Alignment:
Q  564 gtgtccattgtcctggcagtggtgactggtgttgatggtacaaaggacatatccaagggcaatgcaatagtggtattggtgctattgtgtttct 657  Q
    |||| |||||| ||| |||||||  ||||||||||||||||||| |||||||| ||||||||||||||| || ||||||| ||| | |||||||    
T  33623664 gtgttcattgtgctgacagtggttcctggtgttgatggtacaaatgacatatcaaagggcaatgcaatattgatattggtactaatatgtttct 33623757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 48 - 185
Target Start/End: Original strand, 33622521 - 33622658
Alignment:
Q  48 aaatcagtgcaacaagagccctttaaaaccatattaaaaagggaatatcgacctcacttggtgatggcatttgcaatcccgtttttccaacagcttacag 147  Q
    ||||||||  || |||| ||||||||||||||| ||||||| || |||| ||||||  |  | ||||| || |||||| ||| |||| ||||  ||||||    
T  33622521 aaatcagtaaaaaaagatccctttaaaaccatactaaaaagagagtatcaacctcagattttaatggccttagcaatctcgtgtttcgaacatgttacag 33622620  T
Q  148 ggatcaacattgtagccttttattcacccaacctcttt 185  Q
    ||| ||||||||| || || |||||||| |||||||||    
T  33622621 ggaacaacattgttgctttctattcacctaacctcttt 33622658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 587 - 669
Target Start/End: Original strand, 33588990 - 33589072
Alignment:
Q  587 gactggtgttgatggtacaaaggacatatccaagggcaatgcaatagtggtattggtgctattgtgtttctactccacaggtt 669  Q
    |||||||||||||||||||||| |||| || ||||| ||||||| | ||||||||||  || | ||||||||| || ||||||    
T  33588990 gactggtgttgatggtacaaagcacatgtcaaagggaaatgcaacattggtattggttttactatgtttctacgccgcaggtt 33589072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 587 - 669
Target Start/End: Original strand, 33596162 - 33596244
Alignment:
Q  587 gactggtgttgatggtacaaaggacatatccaagggcaatgcaatagtggtattggtgctattgtgtttctactccacaggtt 669  Q
    |||||||||||||||||||||| |||| || ||||| ||||||| | ||||||||||  || | ||||||||| || ||||||    
T  33596162 gactggtgttgatggtacaaagcacatgtcaaagggaaatgcaacattggtattggttttactatgtttctacgccgcaggtt 33596244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 587 - 669
Target Start/End: Original strand, 33603293 - 33603375
Alignment:
Q  587 gactggtgttgatggtacaaaggacatatccaagggcaatgcaatagtggtattggtgctattgtgtttctactccacaggtt 669  Q
    |||||||||||||||||||||| |||| || ||||| ||||||| | ||||||||||  || | ||||||||| || ||||||    
T  33603293 gactggtgttgatggtacaaagcacatgtcaaagggaaatgcaacattggtattggttttactatgtttctacgccgcaggtt 33603375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 280 - 346
Target Start/End: Original strand, 33622758 - 33622824
Alignment:
Q  280 ttgatcgaattggtcgaagattcttgttcatatctgggggaattatgatgcttgtctgcttggtaag 346  Q
    ||||| || ||||||||||||||||||||||| | |||||  |||||||| |||||||||| |||||    
T  33622758 ttgatagatttggtcgaagattcttgttcataaccgggggtgttatgatgtttgtctgctttgtaag 33622824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 91 - 157
Target Start/End: Original strand, 33562979 - 33563045
Alignment:
Q  91 aatatcgacctcacttggtgatggcatttgcaatcccgtttttccaacagcttacagggatcaacat 157  Q
    |||||||||||||||||||||| ||| |||| || ||| |||| ||||| || || |||||||||||    
T  33562979 aatatcgacctcacttggtgatagcagttgctattccgctttttcaacaactcacggggatcaacat 33563045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 420 - 478
Target Start/End: Complemental strand, 19908102 - 19908043
Alignment:
Q  420 aacatcattgcgtcattttattcatgcagccgactc-acttagtgggataaggcttgatt 478  Q
    ||||| ||||||| ||||||| |||| ||||||| | |||||||||||||||||||||||    
T  19908102 aacattattgcgtaattttatccatgtagccgaccccacttagtgggataaggcttgatt 19908043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 429 - 474
Target Start/End: Complemental strand, 43240437 - 43240391
Alignment:
Q  429 gcgtcattttattcatgcagccgac-tcacttagtgggataaggctt 474  Q
    ||||||||| ||||||| ||||||| |||||||||||||||||||||    
T  43240437 gcgtcatttgattcatgtagccgacctcacttagtgggataaggctt 43240391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 429 - 475
Target Start/End: Original strand, 38900181 - 38900227
Alignment:
Q  429 gcgtcattttattcatgcagccgactcacttagtgggataaggcttg 475  Q
    ||||||||| || |||| ||||||| |||||||||||||||||||||    
T  38900181 gcgtcatttgatccatgtagccgacccacttagtgggataaggcttg 38900227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 475
Target Start/End: Complemental strand, 51811335 - 51811290
Alignment:
Q  430 cgtcattttattcatgcagccgactcacttagtgggataaggcttg 475  Q
    |||||||| || |||| ||||||| |||||||||||||||||||||    
T  51811335 cgtcatttgatccatgtagccgacccacttagtgggataaggcttg 51811290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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