View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12449_high_1 (Length: 1008)

Name: NF12449_high_1
Description: NF12449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12449_high_1
NF12449_high_1
[»] chr3 (10 HSPs)
chr3 (19-472)||(35694361-35694814)
chr3 (631-989)||(35694965-35695329)
chr3 (120-200)||(35689918-35689998)
chr3 (830-913)||(557578-557662)
chr3 (846-917)||(47720898-47720969)
chr3 (867-920)||(26373382-26373435)
chr3 (853-933)||(30498991-30499071)
chr3 (832-989)||(42433345-42433504)
chr3 (868-978)||(26482523-26482635)
chr3 (830-914)||(28541480-28541564)
[»] chr6 (2 HSPs)
chr6 (691-982)||(1717546-1717837)
chr6 (829-919)||(31750232-31750323)
[»] chr2 (9 HSPs)
chr2 (663-981)||(25221574-25221893)
chr2 (658-981)||(31055370-31055693)
chr2 (830-919)||(17303530-17303620)
chr2 (828-997)||(44742184-44742354)
chr2 (685-758)||(35658133-35658206)
chr2 (843-919)||(33050827-33050903)
chr2 (867-919)||(35658276-35658328)
chr2 (726-788)||(38001941-38002003)
chr2 (857-918)||(18481911-18481971)
[»] chr4 (9 HSPs)
chr4 (663-983)||(51267303-51267620)
chr4 (658-989)||(7784604-7784935)
chr4 (843-917)||(22065807-22065881)
chr4 (779-895)||(41322015-41322132)
chr4 (830-919)||(20626618-20626707)
chr4 (829-917)||(38011455-38011544)
chr4 (828-919)||(12328414-12328506)
chr4 (852-912)||(41421371-41421431)
chr4 (873-934)||(23096488-23096549)
[»] chr5 (5 HSPs)
chr5 (835-980)||(18012869-18013014)
chr5 (828-919)||(3925536-3925630)
chr5 (853-935)||(5215129-5215211)
chr5 (828-920)||(4157577-4157670)
chr5 (852-918)||(35078046-35078112)
[»] scaffold0042 (1 HSPs)
scaffold0042 (828-920)||(31132-31225)
[»] chr1 (6 HSPs)
chr1 (829-935)||(14635725-14635830)
chr1 (862-980)||(23025570-23025688)
chr1 (857-918)||(11871507-11871568)
chr1 (857-918)||(18628874-18628935)
chr1 (828-884)||(32365995-32366052)
chr1 (866-919)||(43031353-43031406)
[»] chr7 (2 HSPs)
chr7 (863-933)||(43574000-43574070)
chr7 (830-919)||(22575185-22575279)
[»] scaffold0445 (1 HSPs)
scaffold0445 (828-916)||(10393-10482)
[»] scaffold0174 (1 HSPs)
scaffold0174 (829-916)||(30744-30829)


Alignment Details
Target: chr3 (Bit Score: 442; Significance: 0; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 19 - 472
Target Start/End: Original strand, 35694361 - 35694814
Alignment:
Q  19 aattatcaactctctattttcattttcactttgaatgaaaccattttgttgtaactccatttccttcattacccttttgaaactagcagtacaagactat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35694361 aattatcaactctctattttcattttcactttgaatgaaaccattttgttgtaactccatttccttcattacccttttgaaactagcagtacaagactat 35694460  T
Q  119 aatacaaggatagtaaagtaaggaaacatagaagtacctgagtgaagaacacacattaatgtggtggcttaagaagagtgttgcttgaaaagcaacaaca 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35694461 aatacaaggatagtaaagtaaggaaacatagaagtacctgagtgaagaacacacattaatgtggtggcttaagaagagtgttgcttgaaaagcaacaaca 35694560  T
Q  219 taggatatgaagtatgagtttcactctcagcaaaggaagagaaagaaggagcgaaaggaagagataacatactcagcttcattgattgtgtgaggaaact 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |    
T  35694561 taggatatgaagtatgagtttcactctcagcaaaggaagagaaagaaggagcaaaaggaagagataacatactcagcttcagtgattgtgtgaggaaatt 35694660  T
Q  319 aattggtcaacattcaagtcaattccaaaaagtctccttaacttaagagttattaagtcaaactttgttttgtgaaactaattacatgtttctcattagg 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35694661 aattggtcaacattcaagtcaattccaaaaagtctccttaacttaagagttattaagtcaaactttgttttgtgaaactaattacatgtttctcattagg 35694760  T
Q  419 agtagaaaaggagatttattagtggtttcctttgatatatgttttcttgaacag 472  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35694761 agtagaaaaggagatttattagtggtttcctttgatatatgttttcttgaacag 35694814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 631 - 989
Target Start/End: Original strand, 35694965 - 35695329
Alignment:
Q  631 aaagtttggttaccgacggtttgaacttgatctgggttcaaacacgttcttgagaaactagttgtgttggtgttccttgcttgattatctgattcttcca 730  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  35694965 aaagtttggttaccgacggtttggacttgatatgggttcaaacacgttcttgagaaactagttgtgttggtgttccttgcttgattctcttattcttcca 35695064  T
Q  731 ggtctgttgagatctgcaggtcttgatgctttaggtccgcctccacaccg-----gtaccgtccttttatccgttgcagtgcgtgtgattgttttcggag 825  Q
    ||||| ||||||||||||| ||||||||||| ||||||||||||||||||     ||||||||||||||||||| | ||| |||||||||||||||||||    
T  35695065 ggtctattgagatctgcagatcttgatgcttcaggtccgcctccacaccggtaccgtaccgtccttttatccgtcgtagtccgtgtgattgttttcggag 35695164  T
Q  826 tgatgctcgaaagagctttatacctactgctttgtttagggggttgttggtacgtggatctt-gttaccgtgatgacggtcgatccattcgccaacctaa 924  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  35695165 tgatgctcgaaagagctttatacctgctgctttgtttaggggattgctggtacgtggatcttagttgccgtgatgacggtcgatccattcgccaacctaa 35695264  T
Q  925 aacccttttttatcctactgatgttcacttgtcatcttttttgtaacctggtttcgagctcgtac 989  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  35695265 aacccctttttatcctactgatgttcacttgtcatcttttttgtaacccggtttctagctcgtac 35695329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 120 - 200
Target Start/End: Complemental strand, 35689998 - 35689918
Alignment:
Q  120 atacaaggatagtaaagtaaggaaacatagaagtacctgagtgaagaacacacattaatgtggtggcttaagaagagtgtt 200  Q
    ||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  35689998 atacaaggatagtaaagtaagaaaatatagaagtacctgagtgaagaacacaaattaatgtggtggcttaagaagagtgtt 35689918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 830 - 913
Target Start/End: Original strand, 557578 - 557662
Alignment:
Q  830 gctcgaaagagct-ttatacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccatt 913  Q
    ||||||||||||| ||||||||  || |||||| |||||||||||||||||||||||||| ||||||| || |||||||||||||    
T  557578 gctcgaaagagctattatacctgatgttttgttcagggggttgttggtacgtggatcttgataccgtgttggcggtcgatccatt 557662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 846 - 917
Target Start/End: Original strand, 47720898 - 47720969
Alignment:
Q  846 tacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgcc 917  Q
    ||||| ||| |||||| |||||||||||||||||||||||||| |||| || || |||||||||||||||||    
T  47720898 tacctgctgttttgttcagggggttgttggtacgtggatcttgataccttgttggcggtcgatccattcgcc 47720969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 867 - 920
Target Start/End: Complemental strand, 26373435 - 26373382
Alignment:
Q  867 ggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaac 920  Q
    ||||| |||||||||||||||| ||||||| |||||||||||||||||||||||    
T  26373435 ggttgctggtacgtggatcttgataccgtgttgacggtcgatccattcgccaac 26373382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 853 - 933
Target Start/End: Complemental strand, 30499071 - 30498991
Alignment:
Q  853 tgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaacctaaaaccctttt 933  Q
    ||||||||| ||||||||| |||||| |||||||||  |||||| || |||||||||||||||||||  || |||||||||    
T  30499071 tgctttgttgagggggttgctggtacttggatcttgaaaccgtgttggcggtcgatccattcgccaatttataaccctttt 30498991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 832 - 989
Target Start/End: Complemental strand, 42433504 - 42433345
Alignment:
Q  832 tcgaaagagct-ttatacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaacctaaaaccct 930  Q
    ||||||||||| |||||||| |||||||||| ||||| ||| |||||||||||||| | ||||||| || |||| |||||||||| |||    ||||| |    
T  42433504 tcgaaagagctattatacctgctgctttgttcagggg-ttgctggtacgtggatctcgataccgtgttggcggtggatccattcgtcaattataaacctt 42433406  T
Q  931 ttttt-atcctactgatgttcacttgtcat-cttttttgtaacctggtttcgagctcgtac 989  Q
    ||||| || |||  ||||||||||  ||||  |||||||||| ||||||||| ||||||||    
T  42433405 tttttaattctatggatgttcactcttcatatttttttgtaatctggtttcgtgctcgtac 42433345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 868 - 978
Target Start/End: Original strand, 26482523 - 26482635
Alignment:
Q  868 gttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaacctaaaacccttttttatcc-tactgatgttcacttgtca-tcttttt 965  Q
    ||||||||||||||||||||| | || || || ||||||||||| ||| |||| || | |||||||||||||  || ||||||||||  ||| | |||||    
T  26482523 gttgttggtacgtggatcttgatgccatgttggcggtcgatccactcgtcaacttataccccttttttatccacacagatgttcactcttcattgttttt 26482622  T
Q  966 tgtaacctggttt 978  Q
    |||||| ||||||    
T  26482623 tgtaacatggttt 26482635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 830 - 914
Target Start/End: Complemental strand, 28541564 - 28541480
Alignment:
Q  830 gctcgaaagagctt-tatacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattc 914  Q
    |||||||||||||  ||| ||| || ||||||| ||||||||| |||||| ||||| ||| ||||||| || ||||||||||||||    
T  28541564 gctcgaaagagctcctatgcctgctactttgttcagggggttgatggtacatggat-ttgataccgtgttggcggtcgatccattc 28541480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 128; Significance: 1e-65; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 691 - 982
Target Start/End: Complemental strand, 1717837 - 1717546
Alignment:
Q  691 gttgtgttggtgttccttgcttgattatctgattcttccaggtctgttgagatctgcaggtcttgatgctttaggtccgcctccacaccggtaccgtcct 790  Q
    ||||||||| |||||||||||||||| ||||||| || ||||||||||||||||||||||||| ||||| | ||| ||| || ||| ||||||| |||||    
T  1717837 gttgtgttgatgttccttgcttgattctctgattttttcaggtctgttgagatctgcaggtctcgatgcatcagggccgacttcactccggtacagtcct 1717738  T
Q  791 tttatccgttgcagtgcgtgtgattgttttcggagtgatgctcgaaagagctttatacctactgctttgtttagggggttgttggtacgtggatcttgtt 890  Q
     || || |||||||| | ||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||| |||  ||||||| |||||    
T  1717737 cttgtctgttgcagtccttgtgattgttttcggagtgttgctcgaaagagctttatacctgctgctttgttcagggggttgctggatcgtggattttgtt 1717638  T
Q  891 accgtgatgacggtcgatccattcgccaacctaaaacccttttttatcctactgatgttcacttgtcatcttttttgtaacctggtttcgag 982  Q
    |||||| || |||||||||||| ||||||  | ||||||  | ||||||||||||   ||  | ||||| ||||||||||| ||||||||||    
T  1717637 accgtgctggcggtcgatccatacgccaatattaaacccgctcttatcctactgacactctttcgtcatattttttgtaacttggtttcgag 1717546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 829 - 919
Target Start/End: Original strand, 31750232 - 31750323
Alignment:
Q  829 tgctcgaaagagct-ttatacctactgctttgtttaggggg-ttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaa 919  Q
    |||||||||||||| |||||||| ||||||| || |||||| ||| |||||||||||| ||||||||||| || |||||||||||||||||||    
T  31750232 tgctcgaaagagctattatacctgctgctttattcaggggggttgctggtacgtggat-ttgttaccgtgttggcggtcgatccattcgccaa 31750323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 128; Significance: 1e-65; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 663 - 981
Target Start/End: Original strand, 25221574 - 25221893
Alignment:
Q  663 tgggttcaaacacgttcttgagaaactagttgtgttggtgttccttgcttgattatctgattcttccaggtctgttgagatctgcaggtcttgatgcttt 762  Q
    ||||||||||   ||| |||||||||  | |||||||||||||||||||||||| ||||||  || ||||||||||||||| ||||||||||||||| |     
T  25221574 tgggttcaaaagtgtttttgagaaaccggctgtgttggtgttccttgcttgattctctgatattttcaggtctgttgagatttgcaggtcttgatgcatc 25221673  T
Q  763 aggtccgcctccacaccggtaccgtccttttatccgttgcagtgcgtgtgattgttttcggagtgatgctcgaaagagctttatacctactgctttgttt 862  Q
    |||||||||| |||   ||||||||| | || ||||||||||| | |||||||||| ||||| || |||||||||||||||||||||| ||| ||||||     
T  25221674 aggtccgccttcactatggtaccgtcttcttgtccgttgcagtccttgtgattgttctcggattgttgctcgaaagagctttatacctgctgatttgttc 25221773  T
Q  863 agggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaacct-aaaacccttttttatcctactgatgttcacttgtcatct 961  Q
    ||||||||| ||| |||||||||||| |||| || || |||||||||||| || ||| || |||||| |||| ||||||||||| | || || ||| |||    
T  25221774 agggggttgctggaacgtggatcttggtaccatgctggcggtcgatccatacgtcaatctaaaaaccattttgtatcctactgacgctctctcgtcgtct 25221873  T
Q  962 tttttgtaacctggtttcga 981  Q
    |||||||||| |||||||||    
T  25221874 tttttgtaacttggtttcga 25221893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 658 - 981
Target Start/End: Original strand, 31055370 - 31055693
Alignment:
Q  658 tgatctgggttcaaacacgttcttgagaaactagttgtgttggtgttccttgcttgattatctgattcttccaggtctgttgagatctgcaggtcttgat 757  Q
    |||| ||||||||||  | || |||||||||  ||||||||| ||||||| |||||||| ||||||  || ||||| ||||||||| |||||||||  ||    
T  31055370 tgatatgggttcaaaatcttttttgagaaaccggttgtgttgatgttcctagcttgattctctgatattttcaggtttgttgagatatgcaggtctcaat 31055469  T
Q  758 gctttaggtccgcctccacaccggtaccgtccttttatccgttgcagtgcgtgtgattgttttcggagtgatgctcgaaagagctttatacctactgctt 857  Q
    || | |||||| ||| ||| ||||||||||| | || ||| ||||||| | ||||| |||| |||||||| |||||||||||||||||||||| ||||||    
T  31055470 gcatcaggtcctccttcactccggtaccgtcatcttgtcccttgcagtccttgtgagtgttctcggagtgttgctcgaaagagctttataccttctgctt 31055569  T
Q  858 tgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaa-cctaaaacccttttttatcctactgatgttcacttgt 956  Q
    | || ||||||||| |||  ||||||| ||||||||||| || |||||||||||| |||||| | ||||||||| |||||| ||||||    ||  |  |    
T  31055570 ttttcagggggttgctggaccgtggat-ttgttaccgtgttggcggtcgatccatacgccaatcttaaaaccctcttttattctactggccctctttcat 31055668  T
Q  957 catcttttttgtaacctggtttcga 981  Q
    ||||||||||||||| |||||||||    
T  31055669 catcttttttgtaacttggtttcga 31055693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 830 - 919
Target Start/End: Original strand, 17303530 - 17303620
Alignment:
Q  830 gctcgaaagagct-ttatacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaa 919  Q
    ||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||| | || |||| || |||| |||| |||||||||    
T  17303530 gctcgaaagagctattatacctgctgctttgttcagggggttgttggtacgtggatctcgatatcgtgttggcggtggatctattcgccaa 17303620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 828 - 997
Target Start/End: Original strand, 44742184 - 44742354
Alignment:
Q  828 atgctcgaaagagct-ttatacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaacctaaaa 926  Q
    ||||||||||||||| |||| | |  || |||||| ||| ||||| |||||||||||||||| ||| ||| || || | |||| ||| |||||| | ||     
T  44742184 atgctcgaaagagctattatgcatgttgttttgttcaggaggttgctggtacgtggatcttgatactgtgttggcgattgatctatttgccaactttaa- 44742282  T
Q  927 cccttttttatccta-ctgatgttcacttgtcatcttttttgtaacctggtttcgagctcgtacacaggttc 997  Q
    |||||||| |||  | | |||| |||||  ||||||||||||| ||||||||||| ||||||||||||||||    
T  44742283 ccctttttgatctgaacggatgctcactcttcatcttttttgttacctggtttcgtgctcgtacacaggttc 44742354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 685 - 758
Target Start/End: Original strand, 35658133 - 35658206
Alignment:
Q  685 aaactagttgtgttggtgttcct-tgcttgattatctgattcttccaggtctgttgagatctgcaggtcttgatg 758  Q
    |||||||||  |||||| ||||| ||||||||| ||||||  ||||||||||||| |||||||||||||||||||    
T  35658133 aaactagtttagttggttttcctgtgcttgattctctgatg-ttccaggtctgtttagatctgcaggtcttgatg 35658206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 843 - 919
Target Start/End: Complemental strand, 33050903 - 33050827
Alignment:
Q  843 ttatacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaa 919  Q
    |||||||| |||||||||| ||||| |   |||||||||||| | | ||||||| || |||||||||||||||||||    
T  33050903 ttatacctgctgctttgttcaggggatcactggtacgtggatttggataccgtgttggcggtcgatccattcgccaa 33050827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 867 - 919
Target Start/End: Original strand, 35658276 - 35658328
Alignment:
Q  867 ggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaa 919  Q
    ||||| ||||||||||||| | |||||||| || |||||||||||||||||||    
T  35658276 ggttgctggtacgtggatcgttttaccgtgttggcggtcgatccattcgccaa 35658328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 726 - 788
Target Start/End: Original strand, 38001941 - 38002003
Alignment:
Q  726 ttccaggtctgttgagatctgcaggtcttgatgctttaggtccgcctccacaccggtaccgtc 788  Q
    ||||||||||||| ||||||||||||||  |||| | | ||| |||||||| |||||||||||    
T  38001941 ttccaggtctgtttagatctgcaggtctctatgcgtcaagtctgcctccactccggtaccgtc 38002003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 857 - 918
Target Start/End: Complemental strand, 18481971 - 18481911
Alignment:
Q  857 ttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgcca 918  Q
    |||||||||| |||||||| || ||||| | ||||||||| || ||||||||||||||||||    
T  18481971 ttgtttagggagttgttggcacttggat-tcgttaccgtgttggcggtcgatccattcgcca 18481911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 96; Significance: 1e-46; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 663 - 983
Target Start/End: Original strand, 51267303 - 51267620
Alignment:
Q  663 tgggttcaaacacgttcttgagaaactagttgtgttggtgttccttgcttgattatctgattcttccaggtctgttgagatctgcaggtcttgatgcttt 762  Q
    ||||||||||  || | |||||||||  || | ||| ||||| ||||||||||| ||| ||  |||||||||| ||||||||||||||||| ||||| ||    
T  51267303 tgggttcaaaagcgattttgagaaaccggtggagtttgtgtttcttgcttgattctctaatatttccaggtctattgagatctgcaggtctcgatgcatt 51267402  T
Q  763 aggtccgcctccacaccggtaccgtccttttatccgttgcagtgcgtgtgattgttttcggagtgatgctcgaaagagctttatacctactgctttgttt 862  Q
    |||||| |||  || |||||  ||||   || || |||||||| | ||||| |||| || ||||| ||||||||| |||||||||||| ||||||||||     
T  51267403 aggtccaccttaactccggtgtcgtc---ttgtctgttgcagtccttgtgactgttctcagagtgttgctcgaaaaagctttatacctgctgctttgttc 51267499  T
Q  863 agggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaacct-aaaacccttttttatcctactgatgttcacttgtcatct 961  Q
    ||||||||| ||| |||||||| ||||||| ||| || | |||||||||| | |||| || ||||||||||||||||||| ||| |  | ||||||||||    
T  51267500 agggggttgctggaacgtggat-ttgttactgtgttggcagtcgatccatacaccaatctaaaaacccttttttatcctattgacgccctcttgtcatct 51267598  T
Q  962 tttttgtaacctggtttcgagc 983  Q
    |||||||||| |||||||||||    
T  51267599 tttttgtaacttggtttcgagc 51267620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 93; E-Value: 9e-45
Query Start/End: Original strand, 658 - 989
Target Start/End: Original strand, 7784604 - 7784935
Alignment:
Q  658 tgatctgggttcaaacacgttcttgagaaactagttgtgttggtgttccttgcttgattatctgattcttccaggtctgttgagatctgcaggtcttgat 757  Q
    |||| ||||||||||  |||| || ||||||  |||| ||||||||||||||||||||| ||||||  |||||| ||| ||||||||||||| ||| |||    
T  7784604 tgatatgggttcaaaagcgtttttaagaaaccggttgagttggtgttccttgcttgattctctgatatttccagctcttttgagatctgcagctctcgat 7784703  T
Q  758 gctttaggtccgcctccacaccggtaccgtccttttatccgttgcagtgcgtgtgattgttttcggagtgatgctcgaaagagctttatacctactgctt 857  Q
    || | ||| |||||| ||| |  ||||||||   || ||||||||||| | || ||||||| || ||||| ||||||||||||| |||||||| ||||||    
T  7784704 gcatcaggcccgccttcactctagtaccgtctcattttccgttgcagtccttgggattgttctcagagtgttgctcgaaagagcgttatacctgctgctt 7784803  T
Q  858 tgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaacctaa-aacccttttttatcctactgatgttcacttgt 956  Q
    || | ||||| ||| ||| |||||||| ||||||||||| || | ||| |||||| ||||||   || ||  ||||||||  |||| || |||| | |||    
T  7784804 tgctcaggggattgctggaacgtggattttgttaccgtgctggctgtcaatccatacgccaagaaaataaaacttttttagtctaccgacgttctc-tgt 7784902  T
Q  957 catcttttttgtaacctggtttcgagctcgtac 989  Q
    ||||||||||||||| |||||||||||||||||    
T  7784903 catcttttttgtaacttggtttcgagctcgtac 7784935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 843 - 917
Target Start/End: Original strand, 22065807 - 22065881
Alignment:
Q  843 ttatacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgcc 917  Q
    |||||||| |||||||||| |||||||||||||||||||||||||| ||||||| || |||||||||||||||||    
T  22065807 ttatacctgctgctttgttaagggggttgttggtacgtggatcttgataccgtgttggcggtcgatccattcgcc 22065881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 779 - 895
Target Start/End: Original strand, 41322015 - 41322132
Alignment:
Q  779 cggtaccgtccttttatccgttgcagtgcgtgtga-ttgttttcggagtgatgctcgaaagagctttatacctactgctttgtttagggggttgttggta 877  Q
    |||||| ||||| |||||||||||||| | ||||| ||||||| |  ||| ||||||| |||||||||||||| |||||||||| ||||  ||| |||      
T  41322015 cggtactgtcctcttatccgttgcagttcttgtgacttgttttagaggtgttgctcgacagagctttatacctgctgctttgttcagggaattgctggac 41322114  T
Q  878 cgtggatcttgttaccgt 895  Q
     |||||||||||||||||    
T  41322115 tgtggatcttgttaccgt 41322132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 830 - 919
Target Start/End: Complemental strand, 20626707 - 20626618
Alignment:
Q  830 gctcgaaagagctttatacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaa 919  Q
    |||| |||||||| | ||||| || ||| ||| ||||||||| | |||||||||||||| ||||||| || |||| ||||||||||||||    
T  20626707 gctcaaaagagctatttacctgctacttggttcagggggttgctagtacgtggatcttgataccgtgttggcggttgatccattcgccaa 20626618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 829 - 917
Target Start/End: Complemental strand, 38011544 - 38011455
Alignment:
Q  829 tgctcgaaagagcttt-atacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgcc 917  Q
    |||||||||||||||| || | | |||||| ||| |||| | |||||| || ||||| ||||||||||| ||||||||||||||||||||    
T  38011544 tgctcgaaagagcttttatgcttgctgcttagttcagggagctgttggcacttggattttgttaccgtgttgacggtcgatccattcgcc 38011455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 828 - 919
Target Start/End: Original strand, 12328414 - 12328506
Alignment:
Q  828 atgctcgaaagagct-ttatacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaa 919  Q
    ||||||||||||||| |||| ||  |||  ||||| ||||||||| ||||| ||||||| || ||||||  ||||||||||||||||| ||||    
T  12328414 atgctcgaaagagctattatgccggctgtgttgttcagggggttgctggtatgtggatcgtgataccgtattgacggtcgatccattcaccaa 12328506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 852 - 912
Target Start/End: Complemental strand, 41421431 - 41421371
Alignment:
Q  852 ctgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccat 912  Q
    |||||||||| |||| | |||||| |||||||| ||||||||||| || ||||||||||||    
T  41421431 ctgctttgttcagggagctgttggcacgtggattttgttaccgtgttggcggtcgatccat 41421371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 873 - 934
Target Start/End: Complemental strand, 23096549 - 23096488
Alignment:
Q  873 tggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaacctaaaacccttttt 934  Q
    |||||||||||| ||| ||||||| || |||||||||||||| ||||  |||||| ||||||    
T  23096549 tggtacgtggattttgataccgtgttggcggtcgatccattcaccaatttaaaactcttttt 23096488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 1e-28; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 835 - 980
Target Start/End: Original strand, 18012869 - 18013014
Alignment:
Q  835 aaagagctttatacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaacctaaaacccttttt 934  Q
    |||||||||| | | | |||||||||| | |||||||||||||||||||||||| ||||||  || ||||| ||| |||||||||| ||||||||| |||    
T  18012869 aaagagctttgtgcatgctgctttgttcaaggggttgttggtacgtggatcttgataccgtattggcggtcaatcaattcgccaacttaaaaccctcttt 18012968  T
Q  935 tatcctactgatgttcacttgtcatcttttttgtaacctggtttcg 980  Q
    |||||||| || | |||||  |||||||||| ||||||||||||||    
T  18012969 tatcctacagacgatcactcttcatctttttcgtaacctggtttcg 18013014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 828 - 919
Target Start/End: Original strand, 3925536 - 3925630
Alignment:
Q  828 atgctcgaaagagct----ttatacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaa 919  Q
    |||||||||||||||    |||||||| |||||||||| ||||||||| |||||||||||| ||||||||||| ||  ||||||||||||||||||    
T  3925536 atgctcgaaagagctattattatacctgctgctttgttcagggggttgctggtacgtggat-ttgttaccgtgttggtggtcgatccattcgccaa 3925630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 853 - 935
Target Start/End: Original strand, 5215129 - 5215211
Alignment:
Q  853 tgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaacctaaaaccctttttt 935  Q
    ||||||||| | ||||||||||||||||||||||||  || ||| ||||||||||||||||  ||||  || |||||||||||    
T  5215129 tgctttgttcaaggggttgttggtacgtggatcttgaaactgtgttgacggtcgatccatttaccaaattataaccctttttt 5215211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 828 - 920
Target Start/End: Original strand, 4157577 - 4157670
Alignment:
Q  828 atgctcgaaagagct-ttatacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaac 920  Q
    ||||| ||||||||| || | ||||||  |||||| ||| || || |||| ||||||||||| ||||||| |||||||| ||||||||||||||    
T  4157577 atgctggaaagagctattttgcctactattttgttcaggaggctgctggtgcgtggatcttgataccgtgttgacggtcaatccattcgccaac 4157670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 852 - 918
Target Start/End: Complemental strand, 35078112 - 35078046
Alignment:
Q  852 ctgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgcca 918  Q
    ||||||| || | ||||||  ||||||||||||||||  |||||| || ||||||||||||||||||    
T  35078112 ctgctttcttcatggggtttctggtacgtggatcttgaaaccgtgttggcggtcgatccattcgcca 35078046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 46; Significance: 1e-16; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 828 - 920
Target Start/End: Original strand, 31132 - 31225
Alignment:
Q  828 atgctcgaaagagct-ttatacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaac 920  Q
    ||||||||||||||| || | |||  || |||||| ||| ||||| |||||||||||||||| ||||||| |||||||||||||||||||||||    
T  31132 atgctcgaaagagctattttgcctggtgttttgttcaggaggttgctggtacgtggatcttgataccgtgttgacggtcgatccattcgccaac 31225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 829 - 935
Target Start/End: Complemental strand, 14635830 - 14635725
Alignment:
Q  829 tgctcgaaagagctt-tatacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaacctaaaac 927  Q
    ||||||||||||||  ||| ||| |||||||||| |||||| | | ||||||||||| ||||||||||| |||||||||||||||||||| || | ||||    
T  14635830 tgctcgaaagagctcctatgcctgctgctttgttcaggggggtct-ggtacgtggat-ttgttaccgtgttgacggtcgatccattcgcctactttaaac 14635733  T
Q  928 cctttttt 935  Q
    ||||||||    
T  14635732 cctttttt 14635725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 862 - 980
Target Start/End: Original strand, 23025570 - 23025688
Alignment:
Q  862 tagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaacctaaaacccttttttatcctactgatgttcacttgtcatct 961  Q
    |||||||||| ||||||||||||| |  ||||||  || |||||||||||||| ||       |||||||||||||| ||| ||  ||||||| ||||||    
T  23025570 tagggggttgatggtacgtggatcgtaataccgtattggcggtcgatccattcaccttttatgaacccttttttatcttacggactttcacttttcatct 23025669  T
Q  962 tttttgtaacctggtttcg 980  Q
    |||||||||| ||||||||    
T  23025670 tttttgtaacttggtttcg 23025688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 857 - 918
Target Start/End: Original strand, 11871507 - 11871568
Alignment:
Q  857 ttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgcca 918  Q
    ||||| |||| |||||||| || ||||| ||||||||||| |  ||||||||||||||||||    
T  11871507 ttgttcagggagttgttggcacttggattttgttaccgtgttagcggtcgatccattcgcca 11871568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 857 - 918
Target Start/End: Complemental strand, 18628935 - 18628874
Alignment:
Q  857 ttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgcca 918  Q
    ||||| |||| | |||||| || ||||| ||||||||||| || ||||||||||||||||||    
T  18628935 ttgttcagggagctgttggcacttggattttgttaccgtgttggcggtcgatccattcgcca 18628874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 828 - 884
Target Start/End: Original strand, 32365995 - 32366052
Alignment:
Q  828 atgctcgaaagagcttt-atacctactgctttgtttagggggttgttggtacgtggat 884  Q
    ||||||||||||||||| || ||| |||| ||||||  ||||||||||||||||||||    
T  32365995 atgctcgaaagagcttttatgcctgctgcattgtttgaggggttgttggtacgtggat 32366052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 866 - 919
Target Start/End: Complemental strand, 43031406 - 43031353
Alignment:
Q  866 gggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaa 919  Q
    |||||| |||||||||||||| ||||||||| || |||| ||||||||| ||||    
T  43031406 gggttgctggtacgtggatctggttaccgtgttggcggtagatccattcaccaa 43031353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 863 - 933
Target Start/End: Complemental strand, 43574070 - 43574000
Alignment:
Q  863 agggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaacctaaaaccctttt 933  Q
    ||||||||| |||||||||||||||| ||||||| || |||||  ||||||||||||  ||||||||||||    
T  43574070 agggggttgctggtacgtggatcttgataccgtgttggcggtcagtccattcgccaatttaaaaccctttt 43574000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 830 - 919
Target Start/End: Complemental strand, 22575279 - 22575185
Alignment:
Q  830 gctcgaaagagc-tttatacctactgctttgtttagggggttgttggtacgtggatcttgtt---accgtgatgac-ggtcgatccattcgccaa 919  Q
    |||||||||||| ||||  ||| |||||||||| ||||||||| ||||||||||||||| ||   |||||| || | ||||||||||||||||||    
T  22575279 gctcgaaagagcatttacgcctgctgctttgttcagggggttgctggtacgtggatcttcttgataccgtgttggctggtcgatccattcgccaa 22575185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0445 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 828 - 916
Target Start/End: Original strand, 10393 - 10482
Alignment:
Q  828 atgctcgaaagagctt-tatacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgc 916  Q
    |||||| ||||||||| ||| ||| |||||||||| ||||||||| ||||||||||||||||  || ||| || |||| |||||||||||    
T  10393 atgctcaaaagagcttctatgcctgctgctttgttcagggggttgctggtacgtggatcttgaaactgtgttggcggtggatccattcgc 10482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 829 - 916
Target Start/End: Original strand, 30744 - 30829
Alignment:
Q  829 tgctcgaaagagctttatacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgc 916  Q
    |||||||||||||||||| | | |||||| ||  |||| |||||||| || ||||| ||||||||||| |||||||| ||||||||||    
T  30744 tgctcgaaagagctttatgcttgctgctt-gtgcagggagttgttggcacttggat-ttgttaccgtgttgacggtcaatccattcgc 30829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University