View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12449_high_10 (Length: 347)
Name: NF12449_high_10
Description: NF12449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12449_high_10 |
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Alignment Details
Target: chr6 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 13 - 340
Target Start/End: Original strand, 6185633 - 6185960
Alignment:
| Q |
13 |
acctgtgatcattttgacattcacaccagcatgttggcaagcttccaccgctgtcttcacccctgggcgacatggatccttaatgccgacaagtcctaac |
112 |
Q |
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|||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6185633 |
acctgtaatcattttgacattcacaccggcatgttggcaagcttccaccgctgtcttcacccctgggcgacatggatccttaatgccgacaagtcctaac |
6185732 |
T |
|
| Q |
113 |
aatgttaaatcattctcttttaccaccatcttggtgttgtctccttcatgtcctagcttttcgtctgagacttctgtacacgctaaagcgatgcaacgaa |
212 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6185733 |
aatgttaaatcattctcttttaccaccatcttggtgttgtctccttcatgtcctagcttttcgtctgagacttctgtacacgctaaagcgatgcaacgaa |
6185832 |
T |
|
| Q |
213 |
gactactagctgccataccttgaataatgctttcgaatttcagcatagattcattgtcaagatctttcaaaattccataaccatcatagtatcttgaaca |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6185833 |
gactactagctgccataccttgaataatgctttcgaatttcagcatagattcattgtcaagatctttcaaaattccataaccatcatagtatcttgaaca |
6185932 |
T |
|
| Q |
313 |
cattcttagtaccatctctgctcctcct |
340 |
Q |
| |
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|||||||||||||||||| ||| ||||| |
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| T |
6185933 |
cattcttagtaccatctcggctgctcct |
6185960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 13 - 340
Target Start/End: Original strand, 4236540 - 4236867
Alignment:
| Q |
13 |
acctgtgatcattttgacattcacaccagcatgttggcaagcttccaccgctgtcttcacccctgggcgacatggatccttaatgccgacaagtcctaac |
112 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||| |||||||||||| |
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| T |
4236540 |
acctgtaatcattttgacattcacaccagcatgttggcaagcttccactgtcgtcttcacccccgggcgacatggatccttaatgcctacaagtcctaac |
4236639 |
T |
|
| Q |
113 |
aatgttaaatcattctcttttaccaccatcttggtgttgtctccttcatgtcctagcttttcgtctgagacttctgtacacgctaaagcgatgcaacgaa |
212 |
Q |
| |
|
||||||||| |||| |||||||||||||||||| | | ||||||||| | | |||| |||||||| |||| |||| ||||||||||||||||||||| |
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| T |
4236640 |
aatgttaaaccattgtcttttaccaccatcttgttcatatctccttcaacttcaagctcttcgtctgtaacttttgtatacgctaaagcgatgcaacgaa |
4236739 |
T |
|
| Q |
213 |
gactactagctgccataccttgaataatgctttcgaatttcagcatagattcattgtcaagatctttcaaaattccataaccatcatagtatcttgaaca |
312 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||||||| ||| | ||||||||||||||||||| |||||||| ||||||||| |||| ||||||| |
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| T |
4236740 |
gactactagccgccataccttgaataatcctttcgaatttcaacatggtttcattgtcaagatctttcgaaattccaaaaccatcatggtattttgaaca |
4236839 |
T |
|
| Q |
313 |
cattcttagtaccatctctgctcctcct |
340 |
Q |
| |
|
|||||||||||||||||||||| ||||| |
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|
| T |
4236840 |
cattcttagtaccatctctgctgctcct |
4236867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 244 - 340
Target Start/End: Original strand, 21847622 - 21847718
Alignment:
| Q |
244 |
ttcgaatttcagcatagattcattgtcaagatctttcaaaattccataaccatcatagtatcttgaacacattcttagtaccatctctgctcctcct |
340 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||||||||||||| | ||| || ||||||||||||||||||||||||||||||||| ||||| |
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| T |
21847622 |
ttcgaatttcaacatagatccattgtcaagatctttcaaaattccacagccaatgtaatatcttgaacacattcttagtaccatctctgcttctcct |
21847718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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