View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12449_high_14 (Length: 267)
Name: NF12449_high_14
Description: NF12449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12449_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 5 - 256
Target Start/End: Original strand, 2341956 - 2342207
Alignment:
| Q |
5 |
caattctgtcaacaatgcacagtgaaactgcccagcctagtagaaagttcaaagtaaatggatgaaatgacttgattatatacacataaataaagcatgt |
104 |
Q |
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| T |
2341956 |
caattctgtcaacaatgcacagtgaaactgcccagcctagtagaaagttcaaagtaaatggatgaaatgacttgattatatacacataaataaagcatgt |
2342055 |
T |
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| Q |
105 |
gttgggggaattagtttatggtgatctagaaccaactcaagaaggaatcacatatattctgtcggttgtatattgctttcttaattttcccctacccttg |
204 |
Q |
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| T |
2342056 |
gttgggggaattagtttatggtgatctagaaccaactcaagaaggaatcacatatattctgtcggttgtatattgctttcttaattttcccctacccttg |
2342155 |
T |
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| Q |
205 |
ttgatcatcacaggaattttcgggatatttagttcaaagcttagcacaggtt |
256 |
Q |
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| T |
2342156 |
ttgatcatcacaggaattttcgggatatttagttcaaagcttagcacgggtt |
2342207 |
T |
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Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 68 - 236
Target Start/End: Original strand, 7753007 - 7753177
Alignment:
| Q |
68 |
gaaatgacttgattatatacacataaataaagcatgtgttgggggaattagtttatggtgatctagaaccaactcaagaaggaatcacatatattctgtc |
167 |
Q |
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| T |
7753007 |
gaaatgacatgattatttacacataaataaagcatatgttaggggaattaatttttgctactctagaacc-actcaaggaggaatcacatatattatgtc |
7753105 |
T |
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| Q |
168 |
ggttgta---tattgctttcttaattttcccctacccttgttgatcatcacaggaattttcgggatatttag |
236 |
Q |
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| T |
7753106 |
agttgtaaatttttttttttttggttttcccctgccctcattcatcatcacaggaatttttgggatatttag |
7753177 |
T |
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