View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12449_high_15 (Length: 252)
Name: NF12449_high_15
Description: NF12449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12449_high_15 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 6 - 252
Target Start/End: Complemental strand, 5887893 - 5887647
Alignment:
| Q |
6 |
gagcagaacctgtgcaacggagaaaagccggtgaaataggccaaaatgtagtaaaccagaacataaaccatagtggtaaacttgatcaaaatcatagtga |
105 |
Q |
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| T |
5887893 |
gagcagaacatggacaacggagaaaagccggtgaaataggccaaaatgtagtaaaccagaacataaaccatagtggtaaacttgatcaaaatcatagtga |
5887794 |
T |
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| Q |
106 |
aactattcctgtacattacttttcaagtcctaagtcttatgttcatgcaaacaacgaaaatggatcctcgccagatgtgaaaagtggaaagaagaagaaa |
205 |
Q |
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| T |
5887793 |
aactattcctgtacattacttttcaagtcctaagtcttatgttcatgcaaacaacgaaaatggatcctcgccagatgtgaaaagtggaaagaagaagaaa |
5887694 |
T |
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| Q |
206 |
aagccattgtttccgcgaatttttatgttctttgcaagaagaaaagc |
252 |
Q |
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| T |
5887693 |
aagtcattgtttccgcgaatttttatgttctttgcaagaagaaaagc |
5887647 |
T |
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