View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12449_high_16 (Length: 250)

Name: NF12449_high_16
Description: NF12449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12449_high_16
NF12449_high_16
[»] chr8 (2 HSPs)
chr8 (190-234)||(14867379-14867423)
chr8 (190-234)||(23490095-23490139)
[»] chr7 (2 HSPs)
chr7 (190-234)||(33049115-33049159)
chr7 (190-234)||(31742877-31742921)
[»] chr6 (2 HSPs)
chr6 (190-234)||(9177588-9177632)
chr6 (190-234)||(32296363-32296407)
[»] chr4 (3 HSPs)
chr4 (190-234)||(28146982-28147026)
chr4 (190-234)||(55606372-55606416)
chr4 (190-234)||(11440588-11440632)
[»] chr3 (2 HSPs)
chr3 (190-234)||(11783533-11783577)
chr3 (190-234)||(19596565-19596609)
[»] chr2 (3 HSPs)
chr2 (190-234)||(17989113-17989157)
chr2 (190-234)||(37794777-37794821)
chr2 (191-234)||(19263772-19263815)
[»] chr1 (3 HSPs)
chr1 (190-234)||(32617695-32617739)
chr1 (190-234)||(24699922-24699966)
chr1 (190-234)||(14081828-14081872)
[»] chr5 (4 HSPs)
chr5 (190-234)||(16341540-16341584)
chr5 (190-233)||(36491494-36491537)
chr5 (190-231)||(19967505-19967546)
chr5 (190-234)||(13424762-13424806)


Alignment Details
Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 190 - 234
Target Start/End: Complemental strand, 14867423 - 14867379
Alignment:
Q  190 ttttcaattgagatggatgaaaattatatttttagtacatatttg 234  Q
    |||||||||||||||||||||||| | ||||||||||||||||||    
T  14867423 ttttcaattgagatggatgaaaatcacatttttagtacatatttg 14867379  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 234
Target Start/End: Complemental strand, 23490139 - 23490095
Alignment:
Q  190 ttttcaattgagatggatgaaaattatatttttagtacatatttg 234  Q
    |||||||||||||| ||||||||| |||||||| |||||||||||    
T  23490139 ttttcaattgagatagatgaaaatcatatttttcgtacatatttg 23490095  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 190 - 234
Target Start/End: Original strand, 33049115 - 33049159
Alignment:
Q  190 ttttcaattgagatggatgaaaattatatttttagtacatatttg 234  Q
    |||||||||||||||||||||||| | ||||||||||||||||||    
T  33049115 ttttcaattgagatggatgaaaatcacatttttagtacatatttg 33049159  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 234
Target Start/End: Original strand, 31742877 - 31742921
Alignment:
Q  190 ttttcaattgagatggatgaaaattatatttttagtacatatttg 234  Q
    |||||||||||||||||||||||| | ||||||| ||||||||||    
T  31742877 ttttcaattgagatggatgaaaatcacatttttaatacatatttg 31742921  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 190 - 234
Target Start/End: Original strand, 9177588 - 9177632
Alignment:
Q  190 ttttcaattgagatggatgaaaattatatttttagtacatatttg 234  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||    
T  9177588 ttttcaattgagattgatgaaaatcatatttttagtacatatttg 9177632  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 190 - 234
Target Start/End: Original strand, 32296363 - 32296407
Alignment:
Q  190 ttttcaattgagatggatgaaaattatatttttagtacatatttg 234  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||    
T  32296363 ttttcaattgagatagatgaaaatcatatttttagtacatatttg 32296407  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 190 - 234
Target Start/End: Original strand, 28146982 - 28147026
Alignment:
Q  190 ttttcaattgagatggatgaaaattatatttttagtacatatttg 234  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||    
T  28146982 ttttcaattgagatagatgaaaatcatatttttagtacatatttg 28147026  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 190 - 234
Target Start/End: Complemental strand, 55606416 - 55606372
Alignment:
Q  190 ttttcaattgagatggatgaaaattatatttttagtacatatttg 234  Q
    ||||||||||| || ||||||||||||||||||||||||||||||    
T  55606416 ttttcaattgatatagatgaaaattatatttttagtacatatttg 55606372  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 234
Target Start/End: Original strand, 11440588 - 11440632
Alignment:
Q  190 ttttcaattgagatggatgaaaattatatttttagtacatatttg 234  Q
    ||||||||| |||| ||||||||| ||||||||||||||||||||    
T  11440588 ttttcaattaagatagatgaaaatcatatttttagtacatatttg 11440632  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 190 - 234
Target Start/End: Complemental strand, 11783577 - 11783533
Alignment:
Q  190 ttttcaattgagatggatgaaaattatatttttagtacatatttg 234  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||    
T  11783577 ttttcaattgagatagatgaaaatcatatttttagtacatatttg 11783533  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 234
Target Start/End: Complemental strand, 19596609 - 19596565
Alignment:
Q  190 ttttcaattgagatggatgaaaattatatttttagtacatatttg 234  Q
    |||||||||||| ||||| ||||| |||||||||||||| |||||    
T  19596609 ttttcaattgaggtggataaaaatcatatttttagtacaaatttg 19596565  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 190 - 234
Target Start/End: Complemental strand, 17989157 - 17989113
Alignment:
Q  190 ttttcaattgagatggatgaaaattatatttttagtacatatttg 234  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||    
T  17989157 ttttcaattgagatcgatgaaaatcatatttttagtacatatttg 17989113  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 234
Target Start/End: Complemental strand, 37794821 - 37794777
Alignment:
Q  190 ttttcaattgagatggatgaaaattatatttttagtacatatttg 234  Q
    |||||||||||||| || |||||| ||||||||||||||||||||    
T  37794821 ttttcaattgagatagaagaaaatcatatttttagtacatatttg 37794777  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 234
Target Start/End: Original strand, 19263772 - 19263815
Alignment:
Q  191 tttcaattgagatggatgaaaattatatttttagtacatatttg 234  Q
    ||||||||||||| ||||||||| ||||||||| ||||||||||    
T  19263772 tttcaattgagatagatgaaaatcatatttttaatacatatttg 19263815  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 190 - 234
Target Start/End: Complemental strand, 32617739 - 32617695
Alignment:
Q  190 ttttcaattgagatggatgaaaattatatttttagtacatatttg 234  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||    
T  32617739 ttttcaattgagatagatgaaaatcatatttttagtacatatttg 32617695  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 234
Target Start/End: Complemental strand, 24699966 - 24699922
Alignment:
Q  190 ttttcaattgagatggatgaaaattatatttttagtacatatttg 234  Q
    |||||||||||||| |||||||||||||||||| ||| |||||||    
T  24699966 ttttcaattgagatagatgaaaattatatttttcgtatatatttg 24699922  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 234
Target Start/End: Complemental strand, 14081872 - 14081828
Alignment:
Q  190 ttttcaattgagatggatgaaaattatatttttagtacatatttg 234  Q
    |||||||||||||| ||||||||| | |||||||||| |||||||    
T  14081872 ttttcaattgagatagatgaaaatcaaatttttagtatatatttg 14081828  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 234
Target Start/End: Complemental strand, 16341584 - 16341540
Alignment:
Q  190 ttttcaattgagatggatgaaaattatatttttagtacatatttg 234  Q
    |||||||||||||| ||||||||  ||||||||||||||||||||    
T  16341584 ttttcaattgagatagatgaaaaacatatttttagtacatatttg 16341540  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 233
Target Start/End: Original strand, 36491494 - 36491537
Alignment:
Q  190 ttttcaattgagatggatgaaaattatatttttagtacatattt 233  Q
    ||||||||| |||| ||||||||| |||||||||||||||||||    
T  36491494 ttttcaattaagatagatgaaaatcatatttttagtacatattt 36491537  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 231
Target Start/End: Original strand, 19967505 - 19967546
Alignment:
Q  190 ttttcaattgagatggatgaaaattatatttttagtacatat 231  Q
    ||||||||||||||  |||||||| |||||||||||||||||    
T  19967505 ttttcaattgagatatatgaaaatcatatttttagtacatat 19967546  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 234
Target Start/End: Complemental strand, 13424806 - 13424762
Alignment:
Q  190 ttttcaattgagatggatgaaaattatatttttagtacatatttg 234  Q
    ||||||||||| ||  |||||||| ||||||||||||||||||||    
T  13424806 ttttcaattgaaataaatgaaaataatatttttagtacatatttg 13424762  T

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