View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12449_high_2 (Length: 604)
Name: NF12449_high_2
Description: NF12449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12449_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 550; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 5 - 586
Target Start/End: Complemental strand, 38592599 - 38592018
Alignment:
| Q |
5 |
agcagaacctgtgacccatcaactcttcagtgccctccaggtggatttcatgcacctgctggcattgcttatttaggagtattaactaaacgacagctag |
104 |
Q |
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|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
38592599 |
agcaaaacatgtgacccatcaactcttcagtgccctccaggtggatttcatgcacctgctggcattgcttatttaggagtattaactaaacgacatctag |
38592500 |
T |
|
| Q |
105 |
actcgtcgtttattccacaacacatcacaaaacgcaccctcttcatcttcctcacaaaattaattcaatcataattctctttgctatgttatgaatcatt |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
38592499 |
actcgtcgtttattccacaacacatcacaaaacgcaccctcttcatcttcctcacaaaattaattcaatcataattctctttgctatgttatgaatcttt |
38592400 |
T |
|
| Q |
205 |
cataattatgaattcttcatcttcttcaccacctcattacagttctctcccatcatcaaattccattcctccaaatttcatctcacgcgccaccacacca |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38592399 |
cataattatgaattcttcatcttcttcaccacctcattacagttctctcccatcgtcaaattccattcctccaaatttcatctcacgcgccaccacacca |
38592300 |
T |
|
| Q |
305 |
aaacccctctccgccacgcgccgtccatgggaagaagttttcgcactctactctttcacacgtccatactctctcaccgaagccgcctcgcgcgtgaagt |
404 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
38592299 |
aaacccctctccgccacgcgccgtccatgggaagaagttttcgcactctactctttcacacgtccatactctctcaccgaagccacctcgcgcgtgaagt |
38592200 |
T |
|
| Q |
405 |
gtaacatcaaccacttccgcgtaaactacatcatcctcatcctcttcgtcttattcctcagtctcttatggcatcctatctcaatcatagtcttcttgat |
504 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38592199 |
gtaacatcaaccacttccgcgtaaactacatcatcctcatcctcttcgtcttattcctcagtctcttatggcatcctatctcaatcatagtcttcttgat |
38592100 |
T |
|
| Q |
505 |
cacactcatagcttggttttttctctacttcttccgcgacgaaccgattgttgtgtttggccatgttgtggatgatagagct |
586 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
38592099 |
cacactcatagcttggttttttctctacttcttccgtgacgaaccgattgttctgtttggccatgttgtggatgatagagct |
38592018 |
T |
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