View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12449_high_3 (Length: 437)
Name: NF12449_high_3
Description: NF12449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12449_high_3 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 18 - 437
Target Start/End: Original strand, 5887236 - 5887655
Alignment:
| Q |
18 |
gttaatgagtatatgagattagttactttattataaaaaatgaattgcttgcctttgtaaaattaaaaccacaattcataatacttcaaatctcaaactc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5887236 |
gttaatgagtatatgagattagttactttattataaaaaatgaattgcttgcctttgtaaaattaaaaccacaattcataatacttcaaatctcaaactc |
5887335 |
T |
|
| Q |
118 |
aaaaaatacctttgatttggtaaaatctcacaaagatctttacagaagccgaaattcaatggcttatacacaatacagaaacatcnnnnnnnnngttttg |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
5887336 |
aaaaaatacctttgatttggtaaaatctcacaaagatctttacagaagccgaaattcaatggcttatacacaatacagaaacatctttttttgtgttttg |
5887435 |
T |
|
| Q |
218 |
ttcttttctcaccaagggtgacgaacttacttccatgtcctcaaaaagcacatagtggaaaaccattcacaatactgcaaaatcactaacatgtacaagt |
317 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5887436 |
ctctttactcaccaagggtgacgaacttacttccatgtcctcaaaaagcacatagtggaaaaccattcacaatactgcaaaatcactaacatgtacaagt |
5887535 |
T |
|
| Q |
318 |
atggtatactctttcaatagtcttcgaaaatatgagtagttcagaagactactgcaatataagaaagcactgtagtttctcaaaagtaactaccccgaag |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5887536 |
atggtatactctttcaatagtcttcgaaaatatgagtagttcagaagactactgcaatataagaaagcactgtagtttctcaaaagtaactaccccgaag |
5887635 |
T |
|
| Q |
418 |
gagttggatgtgcttttctt |
437 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
5887636 |
gagttggatgtgcttttctt |
5887655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University