View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12449_low_1 (Length: 1165)
Name: NF12449_low_1
Description: NF12449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12449_low_1 |
 | |
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| [»] scaffold0047 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 1147; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 1147; E-Value: 0
Query Start/End: Original strand, 1 - 1155
Target Start/End: Original strand, 42445006 - 42446160
Alignment:
| Q |
1 |
acacgggactcacacagcaagtacagcggctggtgcttttgtcgacaatgcagaagtgctaggaaatgctaaaggtacggcagcagggatggctcctcat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42445006 |
acacgggactcacacagcaagtacagcggctggtgcttttgtcgaaaatgcagaagtgctaggaaatgctaaaggtacggcagcagggatggctcctcat |
42445105 |
T |
|
| Q |
101 |
gctcacctagcaatttacaaagtgtgctttggagaagactgtgccgagagtaatatacttgcggcattagatgcagctgtggaggatggtgtggatgtaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42445106 |
gctcacctagcaatttacaaagtgtgctttggagaagactgtgccgagagtaatatacttgcggcattagatgcagctgtggaggatggtgtggatgtaa |
42445205 |
T |
|
| Q |
201 |
tatcgatatcacttggtctaagtgagcctcctccatttttcaatgatagcactgccataggcgcttttgcagcaattcagaagggaatctttgtaagtat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42445206 |
tatcgatatcacttggtctaagtgagcctcctccatttttcaatgatagcactgccataggcgcttttgcagcaattcagaagggaatctttgtaagtat |
42445305 |
T |
|
| Q |
301 |
tgcagcaggaaactttggtccttctgatgcctccttggttaatggagccccatggatgctcacagttggagcaagcactattgacagaaccattgtggca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42445306 |
tgcagcaggaaactttggtccttctgatgcctccttggttaatggagccccatggatgctcacagttggagcaagcactattgacagaaccattgtggca |
42445405 |
T |
|
| Q |
401 |
acagcagtgcttggaaatggggaagaatttgagggcgaatctgttttccagccttccgatttctctccaacactgttgcccttagcatatgcaggaataa |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42445406 |
acagcagtgcttggaaatggggaagaatttgagggcgaatctgttttccagccttccgatttctctccaacactgttgcccttagcatatgcaggaataa |
42445505 |
T |
|
| Q |
501 |
atggcaaagtagaatcttcattttgtgctaatggatccttgagtgacattgacttcagaggaaaggttgttttgtgtgagaggggagggggtataggaag |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42445506 |
atggcaaagtagaatcttcattttgtgctaatggatccttgagtgacattgacttcagaggaaaggttgttttgtgtgagaggggagggggtataggaag |
42445605 |
T |
|
| Q |
601 |
aattgccaaaggacaggaagtacaaagagcaggtggtgccgccatgattctcatgaatgatgaactcaatggtttcagtctctcagctgatgtacatgtc |
700 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42445606 |
aattgccaaaggacaggaagtacaaagagcaggtggtgccgccatgattctcatgaatgatgaactcaatggtttcagtctctcagctgatgtacatgtc |
42445705 |
T |
|
| Q |
701 |
ctaccagcaacacatgtaagctatgctgctggactaaagatcaaggcctacataaattccacttcaccgacagcaaccatttcgtttaagggaacgatta |
800 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42445706 |
ctaccagcaacacatgtaagctatgctgctggactaaagatcaaggcctacataaattccacttcaccgacagcaaccatttcgtttaagggaacgatta |
42445805 |
T |
|
| Q |
801 |
tcgggaactccttagcgccatccgttgcatcattctcttcaagaggtcccaacttgccgagtcctggtatattgaaaccggatattataggaccaggcgt |
900 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42445806 |
tcgggaactccttagcgccatccgttgcatcattctcttcaagaggtcccaacttgccgagtcctggtatattgaaaccggatattataggaccaggcgt |
42445905 |
T |
|
| Q |
901 |
gaacatcctagcggcatggccattccccctggataacaacaccaattcaaaactaaatttcaacattatgtcaggcacatcaatgtcatgcccacatctt |
1000 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42445906 |
gaacatcctggcggcatggccattccccctggataacaacaccaattcaaaactaaatttcaacattatgtcaggcacatcaatgtcatgcccacatctt |
42446005 |
T |
|
| Q |
1001 |
agtggcattgcggctttgctcaaaagctctcatcctgattggtcaccagcagccataaaatctgccataatgacttctgcagacacactaaatttagaaa |
1100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42446006 |
agtggcattgcggctttgctcaaaagctctcatcctgattggtcaccagcagccataaaatctgccataatgacttctgcagacacactaaatttagaaa |
42446105 |
T |
|
| Q |
1101 |
acaaactcattgtcgatgaaacacttcagccggcaaatctttttgccacaggttc |
1155 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42446106 |
acaaactcattgtcgatgaaacacttcagccggcaaatctttttgccacaggttc |
42446160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 5e-16; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 962 - 1062
Target Start/End: Complemental strand, 3207962 - 3207862
Alignment:
| Q |
962 |
aacattatgtcaggcacatcaatgtcatgcccacatcttagtggcattgcggctttgctcaaaagctctcatcctgattggtcaccagcagccataaaat |
1061 |
Q |
| |
|
||||| || ||||| || ||||||||||| || ||||||||||||||||| |||||| | |||| ||||||||| |||||||| ||||| || ||||||| |
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|
| T |
3207962 |
aacataatttcaggtacctcaatgtcatgtcctcatcttagtggcattgctgctttgttgaaaaactctcatccagattggtctccagctgctataaaat |
3207863 |
T |
|
| Q |
1062 |
c |
1062 |
Q |
| |
|
| |
|
|
| T |
3207862 |
c |
3207862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 974 - 1062
Target Start/End: Original strand, 3179002 - 3179090
Alignment:
| Q |
974 |
ggcacatcaatgtcatgcccacatcttagtggcattgcggctttgctcaaaagctctcatcctgattggtcaccagcagccataaaatc |
1062 |
Q |
| |
|
||||| |||||||| || || ||||| ||||||||||| || ||| ||||||| ||||||||||||||||| ||||| || |||||||| |
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|
| T |
3179002 |
ggcacttcaatgtcttgtcctcatctcagtggcattgctgcattgatcaaaagttctcatcctgattggtcgccagctgcaataaaatc |
3179090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 974 - 1062
Target Start/End: Complemental strand, 3239838 - 3239750
Alignment:
| Q |
974 |
ggcacatcaatgtcatgcccacatcttagtggcattgcggctttgctcaaaagctctcatcctgattggtcaccagcagccataaaatc |
1062 |
Q |
| |
|
||||| |||||||| || || ||||| ||||||||||| || ||| ||||||| ||||||||||||||||| ||||| || |||||||| |
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|
| T |
3239838 |
ggcacttcaatgtcttgtcctcatctcagtggcattgctgcattgatcaaaagttctcatcctgattggtcgccagctgcaataaaatc |
3239750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 995 - 1062
Target Start/End: Complemental strand, 3201955 - 3201888
Alignment:
| Q |
995 |
catcttagtggcattgcggctttgctcaaaagctctcatcctgattggtcaccagcagccataaaatc |
1062 |
Q |
| |
|
||||||||||||||||| |||||| | |||| ||| ||||| ||||||||||||||||| |||||||| |
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|
| T |
3201955 |
catcttagtggcattgctgctttgttgaaaaactcgcatccagattggtcaccagcagctataaaatc |
3201888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1001 - 1062
Target Start/End: Complemental strand, 3225764 - 3225703
Alignment:
| Q |
1001 |
agtggcattgcggctttgctcaaaagctctcatcctgattggtcaccagcagccataaaatc |
1062 |
Q |
| |
|
||||| ||||| || ||| ||||||| ||||||||||||||||||||||| || |||||||| |
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|
| T |
3225764 |
agtggtattgctgcattgatcaaaagttctcatcctgattggtcaccagccgctataaaatc |
3225703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0047 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0047
Description:
Target: scaffold0047; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 957 - 1018
Target Start/End: Original strand, 68159 - 68220
Alignment:
| Q |
957 |
atttcaacattatgtcaggcacatcaatgtcatgcccacatcttagtggcattgcggctttg |
1018 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||| ||| | ||||| | ||||||||| |
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|
| T |
68159 |
atttcaacattatctcaggcacatccatgtcatgccctcatgtaagtggattagcggctttg |
68220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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