View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12449_low_10 (Length: 381)
Name: NF12449_low_10
Description: NF12449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12449_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 22 - 370
Target Start/End: Complemental strand, 2910719 - 2910371
Alignment:
| Q |
22 |
ttcccaaccttaaaaccctcaaacaaatccatgctttgatgatcatcaacggtttcaacaacaacgttaacttcctcggaaatctcgtcttaacaatctc |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2910719 |
ttcccaaccttaaaaccctcaaacaaatccatgctttgatgatcatcaacggtttcaacaacaacgttaacttcctcggagatctcgtcttaacaatctc |
2910620 |
T |
|
| Q |
122 |
aacctcacttgtgggtcccactgcaactccaaccgtcacaaactatgcacaccaactgtttgctcaaattccccaaccagacacatttatgtataatgtc |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2910619 |
aacctcacttgtgggtcccactgcaactccaaccgtcacaaactatgcacaccaactgtttgctcaaattccccaaccagacacatttatgtataatgtc |
2910520 |
T |
|
| Q |
222 |
atgattcgaggttcatctcagagccctaatcctttacgagctatttcgttgtatacggaaatgcatcgacattttgttaagggtgatagctacacttttc |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2910519 |
atgattcgaggttcatctcagagccctaatcctttacgagctatttcgttgtatacggaaatgcatcgacattttgttaagggtgatagctacacttttc |
2910420 |
T |
|
| Q |
322 |
cgtttgttcttaaggcgtgtactaggcttttttgggttaacacaggttc |
370 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
2910419 |
cgtttgttcttaaggcgtgtactaggcttttttgggttaacactggttc |
2910371 |
T |
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