View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12449_low_11 (Length: 370)
Name: NF12449_low_11
Description: NF12449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12449_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 29595868 - 29596228
Alignment:
| Q |
1 |
gatttgagacagttttgcggttctaagtagatgagattttatactaactacgaaacacattaagaaaaagatttacctcctttcaatgacaccaatgttg |
100 |
Q |
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| T |
29595868 |
gatttgagacagttttgcggttctaagtagatgagattttatactaactacgaaacacatgaagaaaaagatttacctcctttcaatgacaccaatgttt |
29595967 |
T |
|
| Q |
101 |
tagtatgtgtttgattcccgaattttcttacatcaaacacgcgactaacaaaccactaattgtgataattgcgaagctagtatttgatgcttcgaaaaac |
200 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||| |||| |||||||||||||||||||| ||||||||||||| |
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| T |
29595968 |
tagtatgtgtttgattcccgaatcttcttacatcaaacacgcgtctaacataccactaatcgtgaaaattgcgaagctagtatttggtgcttcgaaaaac |
29596067 |
T |
|
| Q |
201 |
cgcgcgtctgcagagccccaccgtggatccaaacagacttgtagtataagannnnnnnactagtaagtagataagtgtgttgatcatgaatatgagatgc |
300 |
Q |
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|||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
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| T |
29596068 |
cgcgtgtctgcatagccccaccgtggatccaaacagacttgtagtataagatttttttactagtaagtagataagtgtgttgatcatgaacatgagatgc |
29596167 |
T |
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| Q |
301 |
gccgtcatgtgttgtattcaaacatgc-caagcagtttgttgcctactcatttcatctgtg |
360 |
Q |
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||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
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| T |
29596168 |
gccgtcatgtgttgtattctaacatgctcaagcagtttgttgcctactcatttcatctgtg |
29596228 |
T |
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