View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12449_low_12 (Length: 357)
Name: NF12449_low_12
Description: NF12449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12449_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 17 - 347
Target Start/End: Complemental strand, 20554257 - 20553927
Alignment:
| Q |
17 |
acatcatgaaagagattatgggaattacagatcgtctttgtcaagctttgcaacagaaatcccaagatatacttaatgctatgcaattagtcagctatac |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20554257 |
acatcatgaaagagattatgggaattacagatcgtctttgtcaagctttgcaacagaaatcccaagatatacttaatgctatgcaattagtcagctatac |
20554158 |
T |
|
| Q |
117 |
aaaaacattaattcagaagttgagagatgatggctgggatgatttgttgaaaaatgtaatattattttgtgaaaaacacaacatttattcccctgattgt |
216 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
20554157 |
aaaaacattaattcagaagttgagagatgatgactgggatgatttgttgaaaaatgtaatattattttgtgaaaaacacgaaatttattcccctgattgt |
20554058 |
T |
|
| Q |
217 |
aatgctgtttacatagagcgtgaaggtcgcgctcgtcatcaaatggatcacatcacaatgggtcagcattttagagtgaatctcttttgtgttacaattg |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |
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| T |
20554057 |
aatgctgtttacatagagcgtgaaggtcgcgctcgtcatcaaatggatcacatcacagtgggtcagcattttagagggaatctcttttgtgttacaattg |
20553958 |
T |
|
| Q |
317 |
atcaacaattgtaggaattgaatcacaggtt |
347 |
Q |
| |
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||||||||||| ||||||||||||||||||| |
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| T |
20553957 |
atcaacaattgcaggaattgaatcacaggtt |
20553927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 299; Significance: 1e-168; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 17 - 347
Target Start/End: Complemental strand, 1196014 - 1195685
Alignment:
| Q |
17 |
acatcatgaaagagattatgggaattacagatcgtctttgtcaagctttgcaacagaaatcccaagatatacttaatgctatgcaattagtcagctatac |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
1196014 |
acatcatgaaagagattatgggaattacagatcgtctttgtcaagctttgcaacagaaatccaaagatatacttaatgctatgcaattagtcagctatac |
1195915 |
T |
|
| Q |
117 |
aaaaacattaattcagaagttgagagatgatggctgggatgatttgttgaaaaatgtaatattattttgtgaaaaacacaacatttattcccctgattgt |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
1195914 |
aaaaacattaattcagaagttgagagatgatggtcggg-tgatttgttgaaaaatgtaatattattttgtgaaaaacacgacatttattcccctgattgt |
1195816 |
T |
|
| Q |
217 |
aatgctgtttacatagagcgtgaaggtcgcgctcgtcatcaaatggatcacatcacaatgggtcagcattttagagtgaatctcttttgtgttacaattg |
316 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
1195815 |
aatgctgtttacatagagcgtgaaggtcgcgctcgtcatcaaatggatcacatcacagtgggtcagcattttagagtgaatctcttttgtgttacaattg |
1195716 |
T |
|
| Q |
317 |
atcaacaattgtaggaattgaatcacaggtt |
347 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |
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|
| T |
1195715 |
atcaacaattgcaggaattgaatcacaggtt |
1195685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 17 - 347
Target Start/End: Complemental strand, 1286340 - 1286009
Alignment:
| Q |
17 |
acatcatgaaagagattatgggaattacagatcgtctttgtcaagctttgcaacagaaatcccaagatatacttaatgctatgcaattagtcagctatac |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
1286340 |
acatcatgaaagagattatgggaattacagatcgtctttgtcaagctttgcaacagaaatcccaagatatacttaatgttatgcaattagtcagctatac |
1286241 |
T |
|
| Q |
117 |
aaaaacattaattcagaagttgagagatgatggctgggatgatttgttgaaaaatgt-aatattattttgtgaaaaacacaacatttattcccctgattg |
215 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |
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| T |
1286240 |
aaaaactttaattcagaagttgagagatgatggttgggatgatttgttgaaaaatgtaaatattattttgtgaaaaacacgacatttattcccctgattg |
1286141 |
T |
|
| Q |
216 |
taatgctgtttacatagagcgtgaaggtcgcgctcgtcatcaaatggatcacatcacaatgggtcagcattttagagtgaatctcttttgtgttacaatt |
315 |
Q |
| |
|
||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||| |
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|
| T |
1286140 |
taatgttgattacatagagcgtgaaggtcgtgctcgtcatcaaatggatcacatcacagtgggtcaacattttagagtgaatatcttttgtgttacaatt |
1286041 |
T |
|
| Q |
316 |
gatcaacaattgtaggaattgaatcacaggtt |
347 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |
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| T |
1286040 |
gatcaacaattgcaggaattgaatcacaggtt |
1286009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 182 - 340
Target Start/End: Complemental strand, 35031539 - 35031381
Alignment:
| Q |
182 |
tttgtgaaaaacacaacatttattcccctgattgtaatgctgtttacatagagcgtgaaggtcgcgctcgtcatcaaatggatcacatcacaatgggtca |
281 |
Q |
| |
|
||||||||||||| | ||| |||| | ||||||||||| |||||| ||||||| ||||| | ||||||||||||||| |||||||||||| ||||| |
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| T |
35031539 |
tttgtgaaaaacatgatattaattctcgtgattgtaatgttgtttatatagagcatgaagatagcgctcgtcatcaaaaagatcacatcacagccggtca |
35031440 |
T |
|
| Q |
282 |
gcattttagagtgaatctcttttgtgttacaattgatcaacaattgtaggaattgaatc |
340 |
Q |
| |
|
||||||||||| ||||| |||| ||||||||||||||| |||||| | |||||||||| |
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|
| T |
35031439 |
acattttagagtaaatcttttttatgttacaattgatcagcaattgcaagaattgaatc |
35031381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 239 - 347
Target Start/End: Complemental strand, 17625928 - 17625820
Alignment:
| Q |
239 |
aaggtcgcgctcgtcatcaaatggatcacatcacaatgggtcagcattttagagtgaatctcttttgtgttacaattgatcaacaattgtaggaattgaa |
338 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
17625928 |
aaggtcgcgctcgtcatcaaatggatcacatcacagtgggtcagcattttagagtgaatctcttttgtgttacaattgatcaacaattgcaggaattgaa |
17625829 |
T |
|
| Q |
339 |
tcacaggtt |
347 |
Q |
| |
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||||||||| |
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|
| T |
17625828 |
tcacaggtt |
17625820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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