View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12449_low_20 (Length: 271)

Name: NF12449_low_20
Description: NF12449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12449_low_20
NF12449_low_20
[»] chr1 (8 HSPs)
chr1 (88-168)||(10704756-10704835)
chr1 (79-168)||(10705554-10705644)
chr1 (77-168)||(10703707-10703798)
chr1 (86-168)||(10700217-10700299)
chr1 (77-157)||(10699562-10699642)
chr1 (124-168)||(10704644-10704688)
chr1 (20-54)||(10705677-10705711)
chr1 (124-165)||(10704535-10704576)
[»] chr7 (10 HSPs)
chr7 (79-168)||(41401377-41401466)
chr7 (83-168)||(22872747-22872832)
chr7 (14-49)||(22872053-22872088)
chr7 (20-49)||(11546834-11546863)
chr7 (20-49)||(11556173-11556202)
chr7 (20-49)||(11556257-11556286)
chr7 (21-54)||(22872250-22872283)
chr7 (81-149)||(11546933-11547000)
chr7 (21-49)||(22871884-22871912)
chr7 (84-159)||(22872473-22872548)
[»] chr6 (8 HSPs)
chr6 (17-49)||(13663525-13663557)
chr6 (20-49)||(26441380-26441409)
chr6 (20-49)||(26442370-26442399)
chr6 (20-49)||(26443495-26443524)
chr6 (20-49)||(26443971-26444000)
chr6 (123-168)||(26445095-26445140)
chr6 (20-49)||(26446045-26446074)
chr6 (20-49)||(26452759-26452788)


Alignment Details
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 88 - 168
Target Start/End: Complemental strand, 10704835 - 10704756
Alignment:
Q  88 tatgaagtttaatgtttattagagataactaatcattttttcatgtattttatttaaagagaatttaatatcgctgtataa 168  Q
    ||||||||||||  |||||||| || |||| |||| ||||||||| |||||| |||||||||||||||||||| |||||||    
T  10704835 tatgaagtttaac-tttattagtgacaacttatcaatttttcatgcattttagttaaagagaatttaatatcgttgtataa 10704756  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 79 - 168
Target Start/End: Complemental strand, 10705644 - 10705554
Alignment:
Q  79 tgtctgtcgtatgaagtttaatgtttattagagataactaatca--ttttttcatgtattttatttaaagagaatttaatatcgctgtataa 168  Q
    |||||||||||||||||||||  |||||||| || |||| ||||  |||||||||| |||||| ||||||||| |||||||||| |||||||    
T  10705644 tgtctgtcgtatgaagtttaa-ctttattagtgacaacttatcattttttttcatgcattttagttaaagagagtttaatatcgttgtataa 10705554  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 77 - 168
Target Start/End: Complemental strand, 10703798 - 10703707
Alignment:
Q  77 cttgtctgtcgtatgaagtttaatgtttattagagataactaatcatttttt-catgtattttatttaaagagaatttaatatcgctgtataa 168  Q
    ||||| |||||||||||||||||| |||||||   | |||| |||||||||| ||||||||||| ||||||||| | |||||||| |||||||    
T  10703798 cttgtatgtcgtatgaagtttaat-tttattaataacaacttatcatttttttcatgtattttagttaaagagagtgtaatatcgttgtataa 10703707  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 168
Target Start/End: Complemental strand, 10700299 - 10700217
Alignment:
Q  86 cgtatgaagtttaatgtttattagagataactaatca-ttttttcatgtattttatttaaagagaatttaatatcgctgtataa 168  Q
    ||||||||||||||  |||||||| || || | |||| ||||||||||||||||| ||||||||| |||||||||| |||||||    
T  10700299 cgtatgaagtttaac-tttattagtgacaatttatcacttttttcatgtattttagttaaagagagtttaatatcgttgtataa 10700217  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 77 - 157
Target Start/End: Complemental strand, 10699642 - 10699562
Alignment:
Q  77 cttgtctgtcgtatgaagtttaatgtttattagagataactaatca-ttttttcatgtattttatttaaagagaatttaata 157  Q
    |||||||| ||||||||||||||  |||||||| || |||| |||| ||||||||||||||||| | ||||||| |||||||    
T  10699642 cttgtctgccgtatgaagtttaac-tttattagtgacaacttatcacttttttcatgtattttactcaaagagagtttaata 10699562  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 168
Target Start/End: Complemental strand, 10704688 - 10704644
Alignment:
Q  124 tttttcatgtattttatttaaagagaatttaatatcgctgtataa 168  Q
    ||||||||| |||||| |||||||||||||||||||| |||||||    
T  10704688 tttttcatgcattttagttaaagagaatttaatatcgttgtataa 10704644  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 54
Target Start/End: Complemental strand, 10705711 - 10705677
Alignment:
Q  20 catttgagttatttctaagattttataagttataa 54  Q
    |||||||||||||||||||||||||||||| ||||    
T  10705711 catttgagttatttctaagattttataagtgataa 10705677  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 124 - 165
Target Start/End: Complemental strand, 10704576 - 10704535
Alignment:
Q  124 tttttcatgtattttatttaaagagaatttaatatcgctgta 165  Q
    ||||||||| |||||| |||||||||||||||||||| ||||    
T  10704576 tttttcatgcattttagttaaagagaatttaatatcgttgta 10704535  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 79 - 168
Target Start/End: Complemental strand, 41401466 - 41401377
Alignment:
Q  79 tgtctgtcgtatgaagtttaatgtttattagagataactaatca-ttttttcatgtattttatttaaagagaatttaatatcgctgtataa 168  Q
    |||||||||||||||||||||  |||||||| || |||| |||| |||||||||| |||||| ||||||||  |||||||||| |||||||    
T  41401466 tgtctgtcgtatgaagtttaa-ctttattagtgacaacttatcatttttttcatgcattttagttaaagagggtttaatatcgttgtataa 41401377  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 168
Target Start/End: Complemental strand, 22872832 - 22872747
Alignment:
Q  83 tgtcgtatgaagtttaatgtttattagagataactaatca-ttttttcatgtattttatttaaagagaatttaatatcgctgtataa 168  Q
    |||||||||||||||||  |||||||| || |||| |||| |||||||||| |||||| ||||||||| |||||||||  |||||||    
T  22872832 tgtcgtatgaagtttaa-ctttattagtgacaacttatcatttttttcatgcattttacttaaagagagtttaatatcattgtataa 22872747  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 49
Target Start/End: Complemental strand, 22872088 - 22872053
Alignment:
Q  14 cctgtgcatttgagttatttctaagattttataagt 49  Q
    ||||| ||||||||||||||||||||||||||||||    
T  22872088 cctgtacatttgagttatttctaagattttataagt 22872053  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 49
Target Start/End: Complemental strand, 11546863 - 11546834
Alignment:
Q  20 catttgagttatttctaagattttataagt 49  Q
    ||||||||||||||||||||||||||||||    
T  11546863 catttgagttatttctaagattttataagt 11546834  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 49
Target Start/End: Complemental strand, 11556202 - 11556173
Alignment:
Q  20 catttgagttatttctaagattttataagt 49  Q
    ||||||||||||||||||||||||||||||    
T  11556202 catttgagttatttctaagattttataagt 11556173  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 49
Target Start/End: Complemental strand, 11556286 - 11556257
Alignment:
Q  20 catttgagttatttctaagattttataagt 49  Q
    ||||||||||||||||||||||||||||||    
T  11556286 catttgagttatttctaagattttataagt 11556257  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 22872283 - 22872250
Alignment:
Q  21 atttgagttatttctaagattttataagttataa 54  Q
    ||||||||||||||||||||||||||||| ||||    
T  22872283 atttgagttatttctaagattttataagtgataa 22872250  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 149
Target Start/End: Complemental strand, 11547000 - 11546933
Alignment:
Q  81 tctgtcgtatgaagtttaatgtttattagagataactaatcattttttcatgtattttatttaaagaga 149  Q
    |||| |||||||| |||||  |||||||| || |||| |||||||||||||| |||||| |||||||||    
T  11547000 tctgccgtatgaaatttaac-tttattagtgacaacttatcattttttcatgcattttagttaaagaga 11546933  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 49
Target Start/End: Complemental strand, 22871912 - 22871884
Alignment:
Q  21 atttgagttatttctaagattttataagt 49  Q
    |||||||||||||||||||||||||||||    
T  22871912 atttgagttatttctaagattttataagt 22871884  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 159
Target Start/End: Complemental strand, 22872548 - 22872473
Alignment:
Q  84 gtcgtatgaagtttaatgtttattagagataactaatca-ttttttcatgtattttatttaaagagaatttaatatc 159  Q
    ||||||||||||||||  |||||||| || |||| |||| |||||||||| |||||| ||||||||| ||| |||||    
T  22872548 gtcgtatgaagtttaa-ctttattagtgacaacttatcacttttttcatgcattttagttaaagagagtttcatatc 22872473  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 13663525 - 13663557
Alignment:
Q  17 gtgcatttgagttatttctaagattttataagt 49  Q
    |||||||||||||||||||||||||||||||||    
T  13663525 gtgcatttgagttatttctaagattttataagt 13663557  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 49
Target Start/End: Original strand, 26441380 - 26441409
Alignment:
Q  20 catttgagttatttctaagattttataagt 49  Q
    ||||||||||||||||||||||||||||||    
T  26441380 catttgagttatttctaagattttataagt 26441409  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 49
Target Start/End: Original strand, 26442370 - 26442399
Alignment:
Q  20 catttgagttatttctaagattttataagt 49  Q
    ||||||||||||||||||||||||||||||    
T  26442370 catttgagttatttctaagattttataagt 26442399  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 49
Target Start/End: Original strand, 26443495 - 26443524
Alignment:
Q  20 catttgagttatttctaagattttataagt 49  Q
    ||||||||||||||||||||||||||||||    
T  26443495 catttgagttatttctaagattttataagt 26443524  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 49
Target Start/End: Original strand, 26443971 - 26444000
Alignment:
Q  20 catttgagttatttctaagattttataagt 49  Q
    ||||||||||||||||||||||||||||||    
T  26443971 catttgagttatttctaagattttataagt 26444000  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 123 - 168
Target Start/End: Original strand, 26445095 - 26445140
Alignment:
Q  123 ttttttcatgtattttatttaaagagaatttaatatcgctgtataa 168  Q
    ||||||||||||||||| |||||||||  ||||||||| |||||||    
T  26445095 ttttttcatgtattttagttaaagagagcttaatatcgttgtataa 26445140  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 49
Target Start/End: Original strand, 26446045 - 26446074
Alignment:
Q  20 catttgagttatttctaagattttataagt 49  Q
    ||||||||||||||||||||||||||||||    
T  26446045 catttgagttatttctaagattttataagt 26446074  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 49
Target Start/End: Original strand, 26452759 - 26452788
Alignment:
Q  20 catttgagttatttctaagattttataagt 49  Q
    ||||||||||||||||||||||||||||||    
T  26452759 catttgagttatttctaagattttataagt 26452788  T

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