View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12449_low_22 (Length: 260)
Name: NF12449_low_22
Description: NF12449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12449_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 13 - 251
Target Start/End: Original strand, 12106385 - 12106625
Alignment:
| Q |
13 |
atggacatctggtgtgaagttctaaaagtattcatgttactatcatagaggagattcttggtcctgataaaggacggattaacaaacctgtaaacataaa |
112 |
Q |
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| T |
12106385 |
atggacacatggtgtgaagttctaaaagtattcctgttactatcatagatgagattcttggtcctgataaaggacggattaacaaacctgtaaacataaa |
12106484 |
T |
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| Q |
113 |
aaataattctgaagcgtgcaggaagagtgagataattctaagcaaattttgggcagatgaattggac--agaccaaacttctgacagcacgttggagcca |
210 |
Q |
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| T |
12106485 |
aaataattctgaagcgtgcaggaagagtgagataattctaagcaaattttgggcagatgaattggacaaataccaaacttctgacagcacgttggagcca |
12106584 |
T |
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| Q |
211 |
gatattaatgctgaaaggcatttttcttccttcacaggttc |
251 |
Q |
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| T |
12106585 |
gatattaatgctgaaaggcatttttcttctttcacaggttc |
12106625 |
T |
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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 129 - 180
Target Start/End: Original strand, 37370107 - 37370158
Alignment:
| Q |
129 |
tgcaggaagagtgagataattctaagcaaattttgggcagatgaattggaca |
180 |
Q |
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| T |
37370107 |
tgcaggaagagtgagaaaattctgagcaaattttgggcagatgatttggaca |
37370158 |
T |
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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 114 - 180
Target Start/End: Original strand, 8858882 - 8858948
Alignment:
| Q |
114 |
aataattctgaagcgtgcaggaagagtgagataattctaagcaaattttgggcagatgaattggaca |
180 |
Q |
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| T |
8858882 |
aataactctgaagcttgtaggaaaagtgagaaaattctgagcaaattttgggcagatgatttggaca |
8858948 |
T |
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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 114 - 180
Target Start/End: Original strand, 43699049 - 43699115
Alignment:
| Q |
114 |
aataattctgaagcgtgcaggaagagtgagataattctaagcaaattttgggcagatgaattggaca |
180 |
Q |
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| T |
43699049 |
aataactctaaagcttgcaggaaaagtgagaaaattctgagcaaattttgggcagatgatttggaca |
43699115 |
T |
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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 114 - 180
Target Start/End: Complemental strand, 2612936 - 2612870
Alignment:
| Q |
114 |
aataattctgaagcgtgcaggaagagtgagataattctaagcaaattttgggcagatgaattggaca |
180 |
Q |
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| T |
2612936 |
aataactctaaagcttgcaggaaaagtgagaaaattctgagaaaattttgggcagatgatttggaca |
2612870 |
T |
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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 114 - 180
Target Start/End: Complemental strand, 34161393 - 34161327
Alignment:
| Q |
114 |
aataattctgaagcgtgcaggaagagtgagataattctaagcaaattttgggcagatgaattggaca |
180 |
Q |
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| T |
34161393 |
aataactctgaagcttgcaggaaaagcgagaaaattctgagcaaactttgggcagatgatttggaca |
34161327 |
T |
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