View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12449_low_25 (Length: 250)
Name: NF12449_low_25
Description: NF12449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12449_low_25 |
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| [»] scaffold0294 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 97; Significance: 9e-48; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 95 - 215
Target Start/End: Complemental strand, 15755270 - 15755150
Alignment:
| Q |
95 |
gaaacgaagaataatcggtgtcattcttcacgaaatcgagatgaattgagaaaagatgaaaatcttgaagttcacgcatcaatggcagaagctaactgaa |
194 |
Q |
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| T |
15755270 |
gaaacgaagaagaatcggtgtgattcttcacgaaatcgagatgaattgagaaaagatgaaaagcttgaagttcacgcatcaatggtgaaagctaactgaa |
15755171 |
T |
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| Q |
195 |
tcgtaacaaactcttctcaag |
215 |
Q |
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| T |
15755170 |
tcgtaacaaactcttctcaag |
15755150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 4 - 105
Target Start/End: Complemental strand, 15755413 - 15755312
Alignment:
| Q |
4 |
tcttggaggcatgatgaagacgaagcagaaagtagtaaaattgagaaaatagagtatgaagaaagacgaaggcgatgatacgtgaaacagtgaaacgaag |
103 |
Q |
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||||||||||||||||| ||||||||||| ||||||| ||||||||||| ||||||||||||||| ||||||||||||| | |||||| ||||||||||| |
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| T |
15755413 |
tcttggaggcatgatgaggacgaagcagagagtagtagaattgagaaaacagagtatgaagaaagccgaaggcgatgatgcatgaaacggtgaaacgaag |
15755314 |
T |
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| Q |
104 |
aa |
105 |
Q |
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|| |
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| T |
15755313 |
aa |
15755312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 121 - 218
Target Start/End: Original strand, 6197 - 6294
Alignment:
| Q |
121 |
ttcacgaaatcgagatgaattgagaaaagatgaaaatcttgaagttcacgcatcaatggcagaagctaactgaatcgtaacaaactcttctcaaggag |
218 |
Q |
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| T |
6197 |
ttcacgaaatcgagagaaattgagaaagcatgaaaagattgaagctcacacatcaatggcggaagctaactgaatcgtaacaaactcttctcaaggag |
6294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 6025 - 6130
Alignment:
| Q |
1 |
ttgtcttggaggcatgatgaagacgaagcagaaa-gtagtaaaattgagaaaatagagtatgaagaaagacgaaggcgatgatacgtgaaacagtgaaac |
99 |
Q |
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| T |
6025 |
ttgtcttggaggcatgatgaggacgaagcagaaaagtagtagaattgagaaaacagaggaagaagaaaaacgaagtagatgatgcgtgaaacggtgaaaa |
6124 |
T |
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| Q |
100 |
gaagaa |
105 |
Q |
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| T |
6125 |
gaagaa |
6130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 17117978 - 17117909
Alignment:
| Q |
146 |
aaagatgaa-aatcttgaagttcacgcatcaatggcagaagctaactgaatcgtaacaaactcttctcaa |
214 |
Q |
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| T |
17117978 |
aaagatgaagaagcttgaggatcatgcatcaatggcggaagctaactgaatcgtaacaaactcctctcaa |
17117909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 213
Target Start/End: Original strand, 13140166 - 13140209
Alignment:
| Q |
170 |
gcatcaatggcagaagctaactgaatcgtaacaaactcttctca |
213 |
Q |
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| T |
13140166 |
gcatcaatggcagaagctaactgaatcgtaagtaactcctctca |
13140209 |
T |
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