View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12449_low_26 (Length: 242)
Name: NF12449_low_26
Description: NF12449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12449_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 17 - 230
Target Start/End: Original strand, 33554605 - 33554818
Alignment:
| Q |
17 |
aatttcaagattcaaagataaatnnnnnnngtacctagaagaagattcaagctgaacaacaagaccaccaaccttaggcaaaactacagaaaccaaagct |
116 |
Q |
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| T |
33554605 |
aatttcaagattcaaagatatataaaaaaagtacctagaagaagattcaagctgaacaacaagaccaccaaccttaggcaaaactacagaaaccaaagca |
33554704 |
T |
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| Q |
117 |
ttaagagctttagaaggacacaaaagattttctggtttgcaaaggtaacaaataacatcaaccatgcaaactttcccaacacattgacaacgagtgaatt |
216 |
Q |
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| T |
33554705 |
ttaagagctttagaaggacacaaaagattttctggtttgcaaaggtaacaaataacatcaaccatgcaaactttcccaacacattgacaacgagtgaatt |
33554804 |
T |
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| Q |
217 |
cagaatggtcacag |
230 |
Q |
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| T |
33554805 |
cagaatggtcacag |
33554818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 47 - 230
Target Start/End: Original strand, 33542247 - 33542430
Alignment:
| Q |
47 |
gtacctagaagaagattcaagctgaacaacaagaccaccaaccttaggcaaaactacagaaaccaaagctttaagagctttagaaggacacaaaagattt |
146 |
Q |
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| T |
33542247 |
gtacctagatgaaggttctagatgaacaacaagaccatcaacctcattgaaaacattggaaatggaagccttaagagctttagaaggacacaaaagattt |
33542346 |
T |
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| Q |
147 |
tctggtttgcaaaggtaacaaataacatcaaccatgcaaactttcccaacacattgacaacgagtgaattcagaatggtcacag |
230 |
Q |
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| T |
33542347 |
tcctgtttgcaaaggaaaacaataacatcaaccatacaaattttcccaacacattgacattgaccgaattcagagtggtcacag |
33542430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 205
Target Start/End: Original strand, 48314666 - 48314738
Alignment:
| Q |
133 |
gacacaaaagattttctggtttgcaaaggtaacaaataacatcaaccatgcaaactttcccaacacattgaca |
205 |
Q |
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| T |
48314666 |
gacacacaggatttccttgtttgcaaatgtaacaaataaaatcaatcataaatgctttcccaacacattgaca |
48314738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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