View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12449_low_28 (Length: 228)

Name: NF12449_low_28
Description: NF12449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12449_low_28
NF12449_low_28
[»] chr2 (8 HSPs)
chr2 (79-159)||(18056227-18056307)
chr2 (1-69)||(18056334-18056402)
chr2 (166-214)||(18056142-18056190)
chr2 (1-63)||(14955688-14955750)
chr2 (1-67)||(1421835-1421901)
chr2 (93-127)||(39569872-39569906)
chr2 (97-145)||(7677663-7677710)
chr2 (105-145)||(14955811-14955850)
[»] chr1 (3 HSPs)
chr1 (1-67)||(28053591-28053657)
chr1 (1-63)||(15431544-15431606)
chr1 (97-127)||(47025680-47025710)
[»] chr4 (5 HSPs)
chr4 (1-65)||(37465651-37465715)
chr4 (1-63)||(9714079-9714141)
chr4 (1-63)||(22806705-22806767)
chr4 (1-63)||(43853612-43853674)
chr4 (1-69)||(33921223-33921291)
[»] chr8 (3 HSPs)
chr8 (1-63)||(5046904-5046966)
chr8 (1-63)||(33347397-33347459)
chr8 (1-69)||(27110335-27110403)
[»] chr7 (3 HSPs)
chr7 (1-63)||(13796807-13796869)
chr7 (1-63)||(40993308-40993370)
chr7 (1-69)||(46822615-46822682)
[»] chr6 (2 HSPs)
chr6 (1-67)||(30608389-30608455)
chr6 (88-145)||(29319666-29319722)
[»] chr3 (1 HSPs)
chr3 (1-37)||(12050552-12050588)


Alignment Details
Target: chr2 (Bit Score: 77; Significance: 7e-36; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 79 - 159
Target Start/End: Complemental strand, 18056307 - 18056227
Alignment:
Q  79 gaatatgtgttgtatattatatactttatcaatttaaataaatgaatatcaattttgtttttgtcaaccaagatcagccac 159  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  18056307 gaatatgtgttgtatattatatactttatcaatttaaataaatgaatatcaattttatttttgtcaaccaagatcagccac 18056227  T

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Target: chr2; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 18056402 - 18056334
Alignment:
Q  1 tatcatattatttgtaagcattttatccttgtatgttgttgacttagatgttatgagtttgtttgcata 69  Q
    |||||||||||||||||| ||||| || |||||||||||| ||||||||||||||||||||||||||||    
T  18056402 tatcatattatttgtaagtattttgtcattgtatgttgttaacttagatgttatgagtttgtttgcata 18056334  T

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Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 166 - 214
Target Start/End: Complemental strand, 18056190 - 18056142
Alignment:
Q  166 atttttggattcaagaatttatttgtaaagttgaaaaagtgaagatata 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  18056190 atttttggattcaagaatttatttgtaaagttgaaaaagtgaagatata 18056142  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 14955688 - 14955750
Alignment:
Q  1 tatcatattatttgtaagcattttatccttgtatgttgttgacttagatgttatgagtttgtt 63  Q
    ||||||||||||||||  ||||||||| ||||||||| || |||||| |||| ||||||||||    
T  14955688 tatcatattatttgtagacattttatcattgtatgttattaacttaggtgttgtgagtttgtt 14955750  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 1421835 - 1421901
Alignment:
Q  1 tatcatattatttgtaagcattttatccttgtatgttgttgacttagatgttatgagtttgtttgca 67  Q
    |||||||||||||||| ||||||| || ||||||| | || |||| | |||| ||||||||||||||    
T  1421835 tatcatattatttgtaggcattttgtcgttgtatgctattaacttgggtgttgtgagtttgtttgca 1421901  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 127
Target Start/End: Complemental strand, 39569906 - 39569872
Alignment:
Q  93 tattatatactttatcaatttaaataaatgaatat 127  Q
    ||||||||||| |||||||||||||||||||||||    
T  39569906 tattatatactctatcaatttaaataaatgaatat 39569872  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 145
Target Start/End: Complemental strand, 7677710 - 7677663
Alignment:
Q  97 atatactttatcaatttaaataaatgaatatcaattttgtttttgtcaa 145  Q
    ||||||| |||||||||||| |||||||||||  |||||||||||||||    
T  7677710 atatactctatcaatttaaaaaaatgaatatc-gttttgtttttgtcaa 7677663  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 145
Target Start/End: Original strand, 14955811 - 14955850
Alignment:
Q  105 tatcaatttaaataaatgaatatcaattttgtttttgtcaa 145  Q
    ||||||||||||| |||||||||| ||||||||||||||||    
T  14955811 tatcaatttaaatgaatgaatatc-attttgtttttgtcaa 14955850  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 28053657 - 28053591
Alignment:
Q  1 tatcatattatttgtaagcattttatccttgtatgttgttgacttagatgttatgagtttgtttgca 67  Q
    |||||||||||||||| |||||||||  ||||||| | || |||| |||||||||||||| ||||||    
T  28053657 tatcatattatttgtaggcattttattgttgtatgatctttacttggatgttatgagtttatttgca 28053591  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 15431606 - 15431544
Alignment:
Q  1 tatcatattatttgtaagcattttatccttgtatgttgttgacttagatgttatgagtttgtt 63  Q
    ||||||||||||||||  ||||||||| ||||||| | || |||| |||||| ||||||||||    
T  15431606 tatcatattatttgtagacattttatcgttgtatgctattcacttggatgttgtgagtttgtt 15431544  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 127
Target Start/End: Original strand, 47025680 - 47025710
Alignment:
Q  97 atatactttatcaatttaaataaatgaatat 127  Q
    |||||||||||||||||||||||||||||||    
T  47025680 atatactttatcaatttaaataaatgaatat 47025710  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 37465651 - 37465715
Alignment:
Q  1 tatcatattatttgtaagcattttatccttgtatgttgttgacttagatgttatgagtttgtttg 65  Q
    |||||||||||||||||||||||| || ||||||| | || |||| | |||| ||||||||||||    
T  37465651 tatcatattatttgtaagcattttgtcgttgtatgctattaacttgggtgttgtgagtttgtttg 37465715  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 9714079 - 9714141
Alignment:
Q  1 tatcatattatttgtaagcattttatccttgtatgttgttgacttagatgttatgagtttgtt 63  Q
    |||||||||||||||| ||||||| || |||||||||||| ||||   |||| ||||||||||    
T  9714079 tatcatattatttgtaggcattttgtcattgtatgttgttaacttgagtgttgtgagtttgtt 9714141  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 22806705 - 22806767
Alignment:
Q  1 tatcatattatttgtaagcattttatccttgtatgttgttgacttagatgttatgagtttgtt 63  Q
    |||||||||||||||||||||||| |  ||||||||| || |||| |||| ||||| ||||||    
T  22806705 tatcatattatttgtaagcattttgttgttgtatgttattaacttggatgctatgaatttgtt 22806767  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 43853612 - 43853674
Alignment:
Q  1 tatcatattatttgtaagcattttatccttgtatgttgttgacttagatgttatgagtttgtt 63  Q
    ||||||||||||||| |||||||| |  ||||||||| || |||| |||||| ||||||||||    
T  43853612 tatcatattatttgtcagcattttgttgttgtatgttattaacttggatgttgtgagtttgtt 43853674  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 33921223 - 33921291
Alignment:
Q  1 tatcatattatttgtaagcattttatccttgtatgttgttgacttagatgttatgagtttgtttgcata 69  Q
    |||||||||||||||| ||||| |||  ||||||| | || |||| |||||| |||||||||| |||||    
T  33921223 tatcatattatttgtaggcattgtatagttgtatgctattaacttggatgttgtgagtttgttcgcata 33921291  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 5046904 - 5046966
Alignment:
Q  1 tatcatattatttgtaagcattttatccttgtatgttgttgacttagatgttatgagtttgtt 63  Q
    |||||||||||||||| |||||||||| ||||||||| || |||| | || | ||||||||||    
T  5046904 tatcatattatttgtaggcattttatcgttgtatgttattaacttgggtgatgtgagtttgtt 5046966  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 33347459 - 33347397
Alignment:
Q  1 tatcatattatttgtaagcattttatccttgtatgttgttgacttagatgttatgagtttgtt 63  Q
    |||||||||||||||| ||||||| || ||||||| | || | |||| |||||||||||||||    
T  33347459 tatcatattatttgtaggcattttgtcattgtatgctattaaattaggtgttatgagtttgtt 33347397  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 27110403 - 27110335
Alignment:
Q  1 tatcatattatttgtaagcattttatccttgtatgttgttgacttagatgttatgagtttgtttgcata 69  Q
    ||||||||||||||||  ||||||||| ||||||| | || |||| | |||| |||||||||| |||||    
T  27110403 tatcatattatttgtagacattttatcgttgtatgctattaacttgggtgttgtgagtttgttcgcata 27110335  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 13796869 - 13796807
Alignment:
Q  1 tatcatattatttgtaagcattttatccttgtatgttgttgacttagatgttatgagtttgtt 63  Q
    |||||||||||||||| ||||||| || ||||||| | || |||| |||||| ||||||||||    
T  13796869 tatcatattatttgtaggcattttgtcgttgtatgctattaacttggatgttgtgagtttgtt 13796807  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 40993308 - 40993370
Alignment:
Q  1 tatcatattatttgtaagcattttatccttgtatgttgttgacttagatgttatgagtttgtt 63  Q
    |||||||||||||||| ||||||| || ||||||||| || |||| | |||| ||||||||||    
T  40993308 tatcatattatttgtaggcattttgtcgttgtatgttattaacttgggtgttgtgagtttgtt 40993370  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 46822682 - 46822615
Alignment:
Q  1 tatcatattatttgtaagcattttatccttgtatgttgttgacttagatgttatgagtttgtttgcata 69  Q
    ||||||||||||||| |||||||| || ||||||| | || |||| |||||| |||||||||| |||||    
T  46822682 tatcatattatttgt-agcattttgtcattgtatgctattaacttggatgttgtgagtttgttcgcata 46822615  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 30608455 - 30608389
Alignment:
Q  1 tatcatattatttgtaagcattttatccttgtatgttgttgacttagatgttatgagtttgtttgca 67  Q
    |||||||||||||||| |||||||| | ||||||| | || |||| |||||| |||| |||||||||    
T  30608455 tatcatattatttgtaggcattttaccgttgtatgctattaacttggatgttgtgagattgtttgca 30608389  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 145
Target Start/End: Complemental strand, 29319722 - 29319666
Alignment:
Q  88 ttgtatattatatactttatcaatttaaataaatgaatatcaattttgtttttgtcaa 145  Q
    |||||| | ||||||||||| ||||| ||| |||||||||| ||||||||||||||||    
T  29319722 ttgtatctgatatactttattaatttgaatgaatgaatatc-attttgtttttgtcaa 29319666  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 12050588 - 12050552
Alignment:
Q  1 tatcatattatttgtaagcattttatccttgtatgtt 37  Q
    |||||||||||||||||||||||| || |||||||||    
T  12050588 tatcatattatttgtaagcattttgtcgttgtatgtt 12050552  T

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