View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12449_low_31 (Length: 209)
Name: NF12449_low_31
Description: NF12449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12449_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 139; Significance: 6e-73; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 15 - 200
Target Start/End: Complemental strand, 3324855 - 3324670
Alignment:
| Q |
15 |
cagagattcaactgactcaagaattaagannnnnnnnnaatgatctatatgatgtaagttttaccaagttggaaacaatatcacatgcttcacggatctt |
114 |
Q |
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| T |
3324855 |
cagagattcaactgactcaagaattaagaaacttttttgatgatctatatgatgtaagttttaccaagttcgaaacaatatcacatgcatcacgaatctt |
3324756 |
T |
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| Q |
115 |
agaaatttcctggagatcgcttttgattggattaggaagttgtagcatggccatcaacactcttggcaagaacatatcacaggttc |
200 |
Q |
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| T |
3324755 |
agaaatttcctggagatcgcttttgattggattaggaagttgcagcatggccatcaacactcttggcaagaacatatcacaggttc |
3324670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 200
Target Start/End: Complemental strand, 3262380 - 3262300
Alignment:
| Q |
120 |
tttcctggagatcgcttttgattggattaggaagttgtagcatggccatcaacactcttggcaagaacatatcacaggttc |
200 |
Q |
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| T |
3262380 |
tttcctcgagatcgctattgattagaataggaagttgccacgtagtcatcaaaactcttggaaagagcatatcacaggttc |
3262300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 166 - 201
Target Start/End: Complemental strand, 12598838 - 12598803
Alignment:
| Q |
166 |
catcaacactcttggcaagaacatatcacaggttct |
201 |
Q |
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| T |
12598838 |
catcgacactcttggcaagaacatatcacaggttct |
12598803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 102
Target Start/End: Original strand, 20812662 - 20812710
Alignment:
| Q |
54 |
atgatctatatgatgtaagttttaccaagttggaaacaatatcacatgc |
102 |
Q |
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| T |
20812662 |
atgatctatatgatgtgaattttactgagttggaaacaacatcacatgc |
20812710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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