View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12449_low_6 (Length: 436)
Name: NF12449_low_6
Description: NF12449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12449_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 7 - 420
Target Start/End: Original strand, 37135801 - 37136214
Alignment:
| Q |
7 |
gcagaacctgtggcatgaaacaaggggaaaggaaggaaacttcatttacgtttctgttattccaactttattcaatcgtataaaagttaaaatattaaag |
106 |
Q |
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| T |
37135801 |
gcagaacctgtagcatgaaacaaggggaaaggaaggaaacttcatttacgtttctgttattccaactttattcaatcgtataaaagttaaaatattaaag |
37135900 |
T |
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| Q |
107 |
attgtatactttttgttgttataaacataaagagagaaagttgtgttttcaattttaccttttgagcatcaattgagtttcttatcgctctaacattttt |
206 |
Q |
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| T |
37135901 |
attgtatactttttgttgttataaacataaagagagaaagttgtgttttcaattttaccctttgagcatcaattgagtttcttttcgctctaacattttt |
37136000 |
T |
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| Q |
207 |
aataaataattttgtacctagtgaatttatgataaccatcatcaagaagctgacctcaatcattgtctgaatatcaaattgccatttttgtttctttctt |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
37136001 |
aataaataattttgtacctagtgaatttatgataaccatcatcaagaagctgacctcaatcattgtctgaatatcaaattgccatttttgtttgtttctt |
37136100 |
T |
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| Q |
307 |
tcaaatatgtgccctactttctaaaagctctcatttaaggctaaaatactcatctttatgtcttttgtgtactttgcttgatacaaattatttgttgaga |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37136101 |
tcaaatatgtgccctactttctaaaagctctcatttaaggttaaaatactcatctttatgtcttttgtgtactttgcttgatacaaattatttgttgaga |
37136200 |
T |
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| Q |
407 |
agtttgcttggtag |
420 |
Q |
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|||||||||||||| |
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| T |
37136201 |
agtttgcttggtag |
37136214 |
T |
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