View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12449_low_8 (Length: 404)
Name: NF12449_low_8
Description: NF12449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12449_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 22 - 390
Target Start/End: Complemental strand, 37629596 - 37629227
Alignment:
| Q |
22 |
cagttaccatctttgagaagctgaaggccactgaccatgtcatcttggaaaagaaggatgattccaccggcatcggtgtgtgcacggagaccctttacaa |
121 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37629596 |
cagttaccatctttgagaagctgaaggccactgaccttgtcatcttggaaaagaaggatgattccaccggcatcggtgtgtgcacggagaccctttacaa |
37629497 |
T |
|
| Q |
122 |
ggtctggttttgggcatggagggtagtttgcaaccttggttccaaaagttggtccctttgatccatacaaagccttttttaggtaccccttttctagtcc |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37629496 |
ggtctggttttgggcatggagggtagtttgcaaccttggttccaaaagttggtccctttgatccatacaaagccttttttaggtaccccttttctagtcc |
37629397 |
T |
|
| Q |
222 |
aagattttcacataataagtctagtagctcctctgcaagtgtctctagcttcaaagcaaattccttcattgatttcctgcatcattgtcttgaataattt |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37629396 |
aagattttcacataataagtctagtagctcctctgcaagtgtctctagcttcaaagcaaattccttcattgatttcctgcatcattgtcttgaataattt |
37629297 |
T |
|
| Q |
322 |
agaatctcaataaattgtaatcatca-nnnnnnnngttaacagatcatacatgtgaaacactcatccaca |
390 |
Q |
| |
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| T |
37629296 |
agaatctcaataaattgtaatcatcatttttttttgttaacagatcatagatgtgaaacactcatccaca |
37629227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 101; Significance: 6e-50; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 28 - 300
Target Start/End: Original strand, 36871957 - 36872229
Alignment:
| Q |
28 |
ccatctttgagaagctgaaggccactgaccatgtcatcttggaaaagaaggatgattccaccggcatcggtgtgtgcacggagaccctttacaaggtctg |
127 |
Q |
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| T |
36871957 |
ccatctttgagcaattgtaggccactgaccttatcatcctggaagagaaggatgattcctccggcatcggtgtgagcacgaagacccttcaccagctctg |
36872056 |
T |
|
| Q |
128 |
gttttgggcatggagggtagtttgcaaccttggttccaaaagttggtccctttgatccatacaaagccttttttaggtaccccttttctagtccaagatt |
227 |
Q |
| |
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| ||||||||| |||||||||| || || ||||| |||||||||||||| |||||||||| || |||||||| ||||| || || |||||||||||||| |
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| T |
36872057 |
gatttgggcattgagggtagttggctactttggtgccaaaagttggtcctcttgatccataaaatgcctttttaaggtaacctttctctagtccaagatt |
36872156 |
T |
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| Q |
228 |
ttcacataataagtctagtagctcctctgcaagtgtctctagcttcaaagcaaattccttcattgatttcctg |
300 |
Q |
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|||||||| || || | ||||| ||||| ||| |||||| | ||| || ||||||||||||| ||||||| |
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| T |
36872157 |
ctcacataacaaatccaaaagctcttctgctagtttctctaacctcagagaaaattccttcattactttcctg |
36872229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 29 - 292
Target Start/End: Complemental strand, 8927045 - 8926782
Alignment:
| Q |
29 |
catctttgagaagctgaaggccactgaccatgtcatcttggaaaagaaggatgattccaccggcatcggtgtgtgcacggagaccctttacaaggtctgg |
128 |
Q |
| |
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||||||||||||||||||| |||||||| ||||||||||||| ||||||||||| ||||| ||||| |||||||| | || ||||| | || || || |
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| T |
8927045 |
catctttgagaagctgaagtccactgactttgtcatcttggaagagaaggatgatgccaccagcatctgtgtgtgctctaagtcccttgatgagatcagg |
8926946 |
T |
|
| Q |
129 |
ttttgggcatggagggtagtttgcaaccttggttccaaaagttggtccctttgatccatacaaagccttttttaggtaccccttttctagtccaagattt |
228 |
Q |
| |
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|| || || ||||||||||| ||| || || |||||| |||| |||||||||||||| || | || || | |||||| || || ||||||||||| |
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| T |
8926945 |
cttaggacaaggagggtagttactaacttttgtaccaaaatttggaccctttgatccataaaacactttcttcaagtaccctttctcaagtccaagattc |
8926846 |
T |
|
| Q |
229 |
tcacataataagtctagtagctcctctgcaagtgtctctagcttcaaagcaaattccttcattg |
292 |
Q |
| |
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||||| |||||||| || || |||||||| ||| |||| | ||| |||||||||||||||| |
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| T |
8926845 |
tcacacaataagtcaagaagttcctctgccagtttctccaatttctctgcaaattccttcattg |
8926782 |
T |
|
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