View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12449_low_9 (Length: 383)
Name: NF12449_low_9
Description: NF12449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12449_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 20 - 375
Target Start/End: Original strand, 28637460 - 28637808
Alignment:
| Q |
20 |
tgtccaatactgcttgactgctacaagtatcttttctctttggtgtggtcccttttcatggtctgcaattctagcatcccattgcattgcatctgcaaat |
119 |
Q |
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| T |
28637460 |
tgtccaatactgcttgactgctacaagtatcttttctctttggtgtggtcccttttcatggtctgcaattctagcatcccattgcattgcatctgcaaat |
28637559 |
T |
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| Q |
120 |
ctttttaccttcaacaacacatccacatcatcacgcaatatcacactcccttgtggccttaaaatcctatccatctcaagaagaatgtcctctatattac |
219 |
Q |
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| T |
28637560 |
ctttttaccttcaacaacacatccacatcatcacgcaatatcacactcccttgtggccttaaaatcctatccatctcaacaagaatgtcctctatattac |
28637659 |
T |
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| Q |
220 |
atctgtcacacattgaataatttcatatattattacaaagttattatatgactggtaaatagttattatttctcaatttggcaaaaccaatttcacaatt |
319 |
Q |
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| T |
28637660 |
atctgtcacacattgaataatttcatatattattacaaagttattata--att--taaatag---ttatttctcaattaggcaaaaccaatttcacaatt |
28637752 |
T |
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| Q |
320 |
tacctgtcctcatagaggctaaagagagaatcagcatgtataaagtcacaggttct |
375 |
Q |
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| T |
28637753 |
tacctgtcctcatagagggtaaaaagagaatcagcatgtataaagtcataggttct |
28637808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 20 - 233
Target Start/End: Original strand, 12399829 - 12400042
Alignment:
| Q |
20 |
tgtccaatactgcttgactgctacaagtatcttttctctttggtgtggtcccttttcatggtctgcaattctagcatcccattgcattgcatctgcaaat |
119 |
Q |
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|||||| || ||||||||||||||||||||||||||| |||| | ||||| | |||||||||| |||| | |||||||| |||||| ||||||||| |
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| T |
12399829 |
tgtccagtattgcttgactgctacaagtatcttttctttttgataaggtccttcttcatggtctctaatttttgcatcccactgcatttcatctgcaatg |
12399928 |
T |
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| Q |
120 |
ctttttaccttcaacaacacatccacatcatcacgcaatatcacactcccttgtggccttaaaatcctatccatctcaagaagaatgtcctctatattac |
219 |
Q |
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|| || |||||| ||||||||| |||| || ||||| || ||||| ||||| || | ||||||| |||||||| |||||||||| ||| ||| ||| |
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| T |
12399929 |
ctcttcaccttcgtcaacacatctacattgtcgcgcaaaattacactaccttgcggacgcaaaatccggtccatctccagaagaatgttctccatactac |
12400028 |
T |
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| Q |
220 |
atctgtcacacatt |
233 |
Q |
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|||||| ||||||| |
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| T |
12400029 |
atctgtgacacatt |
12400042 |
T |
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