View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1244_high_23 (Length: 278)

Name: NF1244_high_23
Description: NF1244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1244_high_23
NF1244_high_23
[»] chr5 (20 HSPs)
chr5 (58-200)||(10344891-10345046)
chr5 (108-200)||(7317067-7317171)
chr5 (157-200)||(3025002-3025045)
chr5 (59-200)||(32158599-32158735)
chr5 (59-195)||(25362760-25362909)
chr5 (59-195)||(43584336-43584485)
chr5 (108-200)||(35765910-35766014)
chr5 (159-200)||(3306082-3306123)
chr5 (200-243)||(11890113-11890156)
chr5 (162-200)||(4630904-4630942)
chr5 (162-200)||(6519015-6519053)
chr5 (162-200)||(13761596-13761634)
chr5 (162-200)||(21195418-21195456)
chr5 (162-200)||(26660794-26660832)
chr5 (162-200)||(26932387-26932425)
chr5 (157-195)||(34534403-34534441)
chr5 (162-200)||(39335280-39335318)
chr5 (164-200)||(21319388-21319424)
chr5 (162-194)||(34446103-34446135)
chr5 (164-200)||(39566222-39566258)
[»] scaffold0332 (1 HSPs)
scaffold0332 (58-200)||(3769-3924)
[»] chr7 (26 HSPs)
chr7 (58-200)||(25440911-25441066)
chr7 (108-200)||(715871-715975)
chr7 (59-157)||(18270672-18270771)
chr7 (59-200)||(12977644-12977798)
chr7 (59-200)||(37502358-37502512)
chr7 (59-157)||(12983102-12983201)
chr7 (59-157)||(18292429-18292528)
chr7 (98-201)||(31883822-31883938)
chr7 (98-157)||(40927254-40927314)
chr7 (59-194)||(6747271-6747419)
chr7 (157-200)||(31929929-31929972)
chr7 (98-157)||(44567038-44567098)
chr7 (162-200)||(10476175-10476213)
chr7 (162-200)||(13405201-13405239)
chr7 (162-200)||(19105075-19105113)
chr7 (162-200)||(24133204-24133242)
chr7 (162-200)||(31418587-31418625)
chr7 (160-194)||(34274839-34274873)
chr7 (162-200)||(42880008-42880046)
chr7 (162-200)||(45948704-45948742)
chr7 (108-157)||(34274888-34274937)
chr7 (162-194)||(1742036-1742068)
chr7 (164-200)||(6563490-6563526)
chr7 (164-200)||(27947577-27947613)
chr7 (164-200)||(29531011-29531047)
chr7 (164-200)||(30312497-30312533)
[»] chr3 (23 HSPs)
chr3 (58-200)||(42571485-42571640)
chr3 (59-157)||(44064412-44064511)
chr3 (59-200)||(50038129-50038282)
chr3 (108-157)||(42886843-42886892)
chr3 (64-157)||(19115480-19115574)
chr3 (162-200)||(44676260-44676298)
chr3 (162-200)||(48901759-48901797)
chr3 (162-200)||(48903325-48903363)
chr3 (157-194)||(31583502-31583539)
chr3 (108-156)||(4759385-4759433)
chr3 (98-149)||(31582539-31582591)
chr3 (157-200)||(4759030-4759073)
chr3 (162-200)||(3152879-3152917)
chr3 (162-200)||(4392235-4392273)
chr3 (162-200)||(27067647-27067685)
chr3 (162-200)||(45213795-45213833)
chr3 (108-154)||(45460763-45460809)
chr3 (162-200)||(51398049-51398087)
chr3 (163-200)||(11393584-11393621)
chr3 (164-193)||(45460709-45460738)
chr3 (162-195)||(50088389-50088422)
chr3 (164-200)||(36729885-36729921)
chr3 (164-200)||(41850429-41850465)
[»] chr1 (25 HSPs)
chr1 (58-156)||(52023930-52024029)
chr1 (58-200)||(50249349-50249504)
chr1 (99-200)||(27720997-27721111)
chr1 (157-200)||(25487127-25487170)
chr1 (59-200)||(26352039-26352193)
chr1 (98-157)||(27721167-27721227)
chr1 (160-200)||(34047307-34047347)
chr1 (161-200)||(12591155-12591194)
chr1 (59-157)||(14373371-14373470)
chr1 (108-200)||(34032088-34032192)
chr1 (157-200)||(52024303-52024346)
chr1 (108-157)||(49402879-49402928)
chr1 (162-200)||(9915482-9915520)
chr1 (162-200)||(15823073-15823111)
chr1 (162-200)||(24611594-24611632)
chr1 (162-200)||(29567935-29567973)
chr1 (162-200)||(31699363-31699401)
chr1 (162-200)||(44108638-44108676)
chr1 (162-200)||(50094268-50094306)
chr1 (108-157)||(12484636-12484685)
chr1 (108-157)||(14593353-14593402)
chr1 (164-200)||(12484704-12484740)
chr1 (164-200)||(43759371-43759407)
chr1 (164-200)||(49402947-49402983)
chr1 (162-194)||(49468785-49468817)
[»] chr4 (30 HSPs)
chr4 (58-200)||(22220322-22220477)
chr4 (98-200)||(21864386-21864501)
chr4 (98-200)||(21920247-21920362)
chr4 (98-200)||(52915545-52915660)
chr4 (159-200)||(7906073-7906114)
chr4 (59-200)||(37624595-37624749)
chr4 (59-200)||(4505376-4505529)
chr4 (160-200)||(38510323-38510363)
chr4 (64-200)||(51733463-51733612)
chr4 (160-195)||(620255-620290)
chr4 (59-157)||(7905960-7906059)
chr4 (162-200)||(1819601-1819639)
chr4 (162-200)||(2493141-2493179)
chr4 (162-200)||(10573234-10573272)
chr4 (162-200)||(18430028-18430066)
chr4 (162-200)||(24940918-24940956)
chr4 (162-200)||(37654448-37654486)
chr4 (162-200)||(40345427-40345465)
chr4 (162-200)||(45043668-45043706)
chr4 (162-200)||(47817777-47817815)
chr4 (191-243)||(13128439-13128492)
chr4 (163-200)||(19451292-19451329)
chr4 (164-200)||(11364265-11364301)
chr4 (164-200)||(19930753-19930789)
chr4 (162-194)||(30261304-30261336)
chr4 (98-157)||(43337750-43337810)
chr4 (164-200)||(50203113-50203149)
chr4 (164-200)||(52848136-52848172)
chr4 (164-200)||(52957872-52957908)
chr4 (164-200)||(56373659-56373695)
[»] chr8 (15 HSPs)
chr8 (59-200)||(15160406-15160560)
chr8 (58-156)||(396173-396272)
chr8 (59-200)||(37559493-37559647)
chr8 (100-200)||(17655946-17656059)
chr8 (157-200)||(36921396-36921439)
chr8 (59-157)||(39765820-39765919)
chr8 (157-200)||(40362474-40362517)
chr8 (162-200)||(4760634-4760672)
chr8 (162-200)||(19438275-19438313)
chr8 (162-200)||(19574426-19574464)
chr8 (162-200)||(39463298-39463336)
chr8 (162-200)||(39698742-39698780)
chr8 (162-195)||(34156579-34156612)
chr8 (164-200)||(4989517-4989553)
chr8 (164-200)||(5295484-5295520)
[»] chr6 (9 HSPs)
chr6 (58-200)||(29399985-29400139)
chr6 (59-200)||(4850455-4850609)
chr6 (59-156)||(32429382-32429480)
chr6 (162-200)||(234073-234111)
chr6 (162-200)||(1134964-1135002)
chr6 (162-200)||(29713482-29713520)
chr6 (162-200)||(32193741-32193779)
chr6 (164-200)||(10520717-10520753)
chr6 (117-157)||(19689252-19689292)
[»] chr2 (23 HSPs)
chr2 (58-157)||(27986132-27986232)
chr2 (58-157)||(28072664-28072764)
chr2 (59-200)||(17695785-17695939)
chr2 (108-200)||(14285977-14286074)
chr2 (161-200)||(22620409-22620448)
chr2 (157-200)||(43427358-43427401)
chr2 (108-157)||(35799296-35799345)
chr2 (98-157)||(5717606-5717666)
chr2 (157-200)||(16463103-16463146)
chr2 (162-200)||(441307-441345)
chr2 (162-200)||(4658309-4658347)
chr2 (162-200)||(12342132-12342170)
chr2 (162-200)||(18719508-18719546)
chr2 (162-200)||(27964446-27964484)
chr2 (162-200)||(36685816-36685854)
chr2 (162-195)||(4051779-4051812)
chr2 (108-157)||(16463042-16463091)
chr2 (108-153)||(16792584-16792629)
chr2 (163-200)||(16807594-16807631)
chr2 (163-200)||(16846875-16846912)
chr2 (108-157)||(43427297-43427346)
chr2 (164-200)||(7644685-7644721)
chr2 (164-200)||(45081978-45082014)
[»] scaffold0565 (1 HSPs)
scaffold0565 (162-200)||(9717-9755)
[»] scaffold0294 (1 HSPs)
scaffold0294 (162-200)||(3580-3618)
[»] scaffold0110 (1 HSPs)
scaffold0110 (162-200)||(24816-24854)
[»] scaffold0015 (1 HSPs)
scaffold0015 (162-200)||(21157-21195)
[»] scaffold0026 (1 HSPs)
scaffold0026 (164-200)||(4180-4216)


Alignment Details
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 58 - 200
Target Start/End: Original strand, 10344891 - 10345046
Alignment:
Q  58 ctttacacacatattaagaaatgcaaggattnnnnnnnncagaatgattattt-accaagttatccttattagctattgaatagttttaaaagtaatact 156  Q
    |||||||||||||||||||||||||| ||||         |||||| |||||| ||||| |||||||||||||||||||  |||||||||||||||||||    
T  10344891 ctttacacacatattaagaaatgcaatgattaaaagaaagagaatggttattttaccaaattatccttattagctattggttagttttaaaagtaatact 10344990  T
Q  157 t------------gcagagtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    |            |||||||||||||||||||||||||||||||||||||| ||||    
T  10344991 ttggaagtagtgtgcagagtattaattggagggtacaattgaaaagaaaaagttat 10345046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 108 - 200
Target Start/End: Complemental strand, 7317171 - 7317067
Alignment:
Q  108 tttaccaagttatccttattagctattgaatagttttaaaagtaatactt------------gcagagtattaattggagggtacaattgaaaagaaaaa 195  Q
    |||||||| |||||||||||| ||||||| ||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||    
T  7317171 tttaccaaattatccttattaactattgattagttttaaaagtaatactttgaaaatagtttgcagagtattaattggagggtacaattgaaaagaaaaa 7317072  T
Q  196 cttat 200  Q
     ||||    
T  7317071 gttat 7317067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 157 - 200
Target Start/End: Original strand, 3025002 - 3025045
Alignment:
Q  157 tgcagagtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||||||||||||||||||||||||||||||||||||| ||||    
T  3025002 tgcagagtattaattggagggtacaattgaaaagaaaaagttat 3025045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 59 - 200
Target Start/End: Complemental strand, 32158735 - 32158599
Alignment:
Q  59 tttacacacatattaagaaatgcaaggattnnnnnnnncagaatgattattt-accaagttatccttattagctattgaatagttttaaaagtaatactt 157  Q
    ||||||||||||||||||||||||| ||||         |||||| |||||| ||||| ||||| |||||| ||||||  |||||||||| ||      |    
T  32158735 tttacacacatattaagaaatgcaatgattaaaagaaagagaatggttattttaccaaattatctttattaactattggttagttttaaa-gtg-----t 32158642  T
Q  158 gcagagtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    |||||||||||||||||||||||||||||||| ||||| ||||    
T  32158641 gcagagtattaattggagggtacaattgaaaaaaaaaagttat 32158599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 59 - 195
Target Start/End: Original strand, 25362760 - 25362909
Alignment:
Q  59 tttacacacatattaagaaatgcaaggattnnnnnnnncagaatgattattt-accaagttatccttattagctattgaatagttttaaaagtaatactt 157  Q
    ||||||||||||||||||||||||| ||||         |||||| || ||| |||||  ||||||||||| ||||||  ||||||||||||||||||||    
T  25362760 tttacacacatattaagaaatgcaatgattaaaagaaagagaatggttgttttaccaaaatatccttattaactattggctagttttaaaagtaatactt 25362859  T
Q  158 ------------gcagagtattaattggagggtacaattgaaaagaaaaa 195  Q
                |||||||||||||||||||||| |||||||||||||||    
T  25362860 tggaagtagtgtgcagagtattaattggagggtaaaattgaaaagaaaaa 25362909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 59 - 195
Target Start/End: Original strand, 43584336 - 43584485
Alignment:
Q  59 tttacacacatattaagaaatgcaaggattnnnnnnnncagaatgattattt-accaagttatccttattagctattgaatagttttaaaagtaatactt 157  Q
    ||||||||||||||||||||| ||| ||||         ||||||||||||| ||||| |||||||||||| ||||||  || |||||||||||||| ||    
T  43584336 tttacacacatattaagaaatacaatgattaaaagaaagagaatgattattttaccaaattatccttattaactattggttaattttaaaagtaatattt 43584435  T
Q  158 ------------gcagagtattaattggagggtacaattgaaaagaaaaa 195  Q
                |||||||||||||||||||||| |||||||||||||||    
T  43584436 tggaagtagtgtgcagagtattaattggagggtataattgaaaagaaaaa 43584485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 200
Target Start/End: Original strand, 35765910 - 35766014
Alignment:
Q  108 tttaccaagttatccttattagctattgaatagttttaaaagtaatact------------tgcagagtattaattggagggtacaattgaaaagaaaaa 195  Q
    |||||||| |||||||||||| ||||||  |||||||||||||||||||            || ||||||||||||||| ||||||||||||||||||||    
T  35765910 tttaccaaattatccttattaactattggttagttttaaaagtaatactttagaattagtgtgtagagtattaattggacggtacaattgaaaagaaaaa 35766009  T
Q  196 cttat 200  Q
     ||||    
T  35766010 gttat 35766014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 200
Target Start/End: Original strand, 3306082 - 3306123
Alignment:
Q  159 cagagtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    |||||||||||||| |||||||||||||||||||||| ||||    
T  3306082 cagagtattaattgaagggtacaattgaaaagaaaaaattat 3306123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 200 - 243
Target Start/End: Complemental strand, 11890156 - 11890113
Alignment:
Q  200 tgggttaataggcatttacccctgtaatattggtcacctttggt 243  Q
    ||||||||||||| |||||||||||||||| |||||| ||||||    
T  11890156 tgggttaataggcctttacccctgtaatataggtcacttttggt 11890113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 200
Target Start/End: Complemental strand, 4630942 - 4630904
Alignment:
Q  162 agtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||||||||||||| |||||||||||||||||| ||||    
T  4630942 agtattaattggaggatacaattgaaaagaaaaagttat 4630904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 200
Target Start/End: Complemental strand, 6519053 - 6519015
Alignment:
Q  162 agtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  6519053 agtattaattgaagggtacaattgaaaagaaaaagttat 6519015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 200
Target Start/End: Complemental strand, 13761634 - 13761596
Alignment:
Q  162 agtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  13761634 agtattaattgaagggtacaattgaaaagaaaaatttat 13761596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 200
Target Start/End: Complemental strand, 21195456 - 21195418
Alignment:
Q  162 agtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  21195456 agtattaattgaagggtacaattgaaaagaaaaaattat 21195418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 200
Target Start/End: Complemental strand, 26660832 - 26660794
Alignment:
Q  162 agtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  26660832 agtattaattgaagggtacaattgaaaagaaaaagttat 26660794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 200
Target Start/End: Complemental strand, 26932425 - 26932387
Alignment:
Q  162 agtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  26932425 agtattaattgaagggtacaattgaaaagaaaaagttat 26932387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 195
Target Start/End: Complemental strand, 34534441 - 34534403
Alignment:
Q  157 tgcagagtattaattggagggtacaattgaaaagaaaaa 195  Q
    |||| ||||||||||| ||||||||||||||||||||||    
T  34534441 tgcatagtattaattgaagggtacaattgaaaagaaaaa 34534403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 200
Target Start/End: Original strand, 39335280 - 39335318
Alignment:
Q  162 agtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  39335280 agtattaattgaagggtacaattgaaaagaaaaagttat 39335318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 200
Target Start/End: Original strand, 21319388 - 21319424
Alignment:
Q  164 tattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||||||| |||||||||||||||||||||| ||||    
T  21319388 tattaattgaagggtacaattgaaaagaaaaagttat 21319424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 194
Target Start/End: Original strand, 34446103 - 34446135
Alignment:
Q  162 agtattaattggagggtacaattgaaaagaaaa 194  Q
    ||||||||||| |||||||||||||||||||||    
T  34446103 agtattaattgaagggtacaattgaaaagaaaa 34446135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 200
Target Start/End: Complemental strand, 39566258 - 39566222
Alignment:
Q  164 tattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||||||| |||||||||||||||||||||| ||||    
T  39566258 tattaattgaagggtacaattgaaaagaaaaagttat 39566222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0332 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0332
Description:

Target: scaffold0332; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 58 - 200
Target Start/End: Original strand, 3769 - 3924
Alignment:
Q  58 ctttacacacatattaagaaatgcaaggattnnnnnnnncagaatgattattt-accaagttatccttattagctattgaatagttttaaaagtaatact 156  Q
    ||||||||||||| |||||||||||| ||||         | ||||||||||| ||||| |||||||||||||||||||  |||||||||||||||||||    
T  3769 ctttacacacataataagaaatgcaatgattaaaagaaagaaaatgattattttaccaaattatccttattagctattggttagttttaaaagtaatact 3868  T
Q  157 t------------gcagagtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    |            |||||||||||||||||||||||||||||||||||||| ||||    
T  3869 ttggaagtagtgtgcagagtattaattggagggtacaattgaaaagaaaaagttat 3924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 58 - 200
Target Start/End: Complemental strand, 25441066 - 25440911
Alignment:
Q  58 ctttacacacatattaagaaatgcaaggattnnnnnnnncagaatgattattt-accaagttatccttattagctattgaatagttttaaaagtaatact 156  Q
    ||||||||||||||||||||||| || ||||         ||||||||||||| || || ||||||||||||||||| || |||||||||||||||||||    
T  25441066 ctttacacacatattaagaaatgtaatgattaaaagaaagagaatgattattttactaaattatccttattagctatcgattagttttaaaagtaatact 25440967  T
Q  157 t------------gcagagtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    |            |||||||||||||||||||||||||||||||||||||| ||||    
T  25440966 ttggaagtagtgtgcagagtattaattggagggtacaattgaaaagaaaaagttat 25440911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 108 - 200
Target Start/End: Original strand, 715871 - 715975
Alignment:
Q  108 tttaccaagttatccttattagctattgaatagttttaaaagtaatactt------------gcagagtattaattggagggtacaattgaaaagaaaaa 195  Q
    |||||||| |||||||||||||||||||  ||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||    
T  715871 tttaccaaattatccttattagctattggttagttttaaaagtaatactttggaagtagtgagcagagtattaattggagggtacaattgaaaagaaaaa 715970  T
Q  196 cttat 200  Q
     ||||    
T  715971 attat 715975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 59 - 157
Target Start/End: Complemental strand, 18270771 - 18270672
Alignment:
Q  59 tttacacacatattaagaaatgcaaggattnnnnnnnncagaatgattattt-accaagttatccttattagctattgaatagttttaaaagtaatactt 157  Q
    ||||||||||||||||||||||||| ||||         ||||||||||||| ||||| |||||||||||| ||||||| ||||||||||||||||||||    
T  18270771 tttacacacatattaagaaatgcaatgattaaaagaaatagaatgattattttaccaaattatccttattaactattgattagttttaaaagtaatactt 18270672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 59 - 200
Target Start/End: Original strand, 12977644 - 12977798
Alignment:
Q  59 tttacacacatattaagaaatgcaaggattnnnnnnnncagaatgattattt-accaagttatccttattagctattgaatagttttaaaagtaatactt 157  Q
    ||||||||||||||||||||||||| ||||         |||||| |||||| ||||| |||||||||||| |||||   ||||||||||||||||||||    
T  12977644 tttacacacatattaagaaatgcaatgattaaaagaaagagaatggttattttaccaaattatccttattaactattagttagttttaaaagtaatactt 12977743  T
Q  158 ------------gcagagtattaattggagggtacaattgaaaagaaaaacttat 200  Q
                ||||||||||||||||| |||||||||||||||||||| ||||    
T  12977744 tggaagtagtgtgcagagtattaattggatggtacaattgaaaagaaaaagttat 12977798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 59 - 200
Target Start/End: Complemental strand, 37502512 - 37502358
Alignment:
Q  59 tttacacacatattaagaaatgcaaggattnnnnnnnncagaatgattattt-accaagttatccttattagctattgaatagttttaaaagtaatactt 157  Q
    ||||||||||||||||||||| ||| ||||         ||||||||||||| ||||| |||||||||||| ||||||  ||||||||||||||||| ||    
T  37502512 tttacacacatattaagaaatacaatgattaaaagaaagagaatgattattttaccaaattatccttattaactattggttagttttaaaagtaatattt 37502413  T
Q  158 ------------gcagagtattaattggagggtacaattgaaaagaaaaacttat 200  Q
                |||||||||||||||||||||| ||||||||||||||| ||||    
T  37502412 tggaagtagtgtgcagagtattaattggagggtaaaattgaaaagaaaaagttat 37502358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 59 - 157
Target Start/End: Original strand, 12983102 - 12983201
Alignment:
Q  59 tttacacacatattaagaaatgcaaggattnnnnnnnncagaatgattattt-accaagttatccttattagctattgaatagttttaaaagtaatactt 157  Q
    ||||||||||||||||||||||||| ||||         |||||| |||||| ||||| |||||||||||| ||||||  ||||||||||||||||||||    
T  12983102 tttacacacatattaagaaatgcaatgattaaaagaaagagaatggttattttaccaaattatccttattaactattggttagttttaaaagtaatactt 12983201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 59 - 157
Target Start/End: Complemental strand, 18292528 - 18292429
Alignment:
Q  59 tttacacacatattaagaaatgcaaggattnnnnnnnncagaatgattattt-accaagttatccttattagctattgaatagttttaaaagtaatactt 157  Q
    ||||||||||||||||||||||||| ||||         |||||| |||||| ||||| |||||||||||| ||||||  ||||||||||||||||||||    
T  18292528 tttacacacatattaagaaatgcaatgattaaaagaaagagaatggttattttaccaaattatccttattaactattggttagttttaaaagtaatactt 18292429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 98 - 201
Target Start/End: Complemental strand, 31883938 - 31883822
Alignment:
Q  98 agaatgattattt-accaagttatccttattagctattgaatagttttaaaagtaatact------------tgcagagtattaattggagggtacaatt 184  Q
    ||||||||||||| ||||| |||||||||||| ||||||  |||||||||||||||||||            ||||||||||||||||||  ||||||||    
T  31883938 agaatgattattttaccaaattatccttattaactattggttagttttaaaagtaatactttggaagtagtgtgcagagtattaattggaatgtacaatt 31883839  T
Q  185 gaaaagaaaaacttatg 201  Q
    ||||||||||| |||||    
T  31883838 gaaaagaaaaagttatg 31883822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 98 - 157
Target Start/End: Complemental strand, 40927314 - 40927254
Alignment:
Q  98 agaatgattattt-accaagttatccttattagctattgaatagttttaaaagtaatactt 157  Q
    ||||||||||||| ||||| |||||||||||| ||||||  ||||||||||||||||||||    
T  40927314 agaatgattattttaccaaattatccttattaactattggttagttttaaaagtaatactt 40927254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 194
Target Start/End: Complemental strand, 6747419 - 6747271
Alignment:
Q  59 tttacacacatattaagaaatgcaaggattnnnnnnnncagaatgattattt-accaagttatccttattagctattgaatagttttaaaagtaatactt 157  Q
    ||||||||||||||||||||||||| ||||         |||||| |||||| ||||| |||||||||||| | ||||  |||||||||| |||||||||    
T  6747419 tttacacacatattaagaaatgcaatgattaaaagaaagagaatggttattttaccaaattatccttattaaccattggttagttttaaatgtaatactt 6747320  T
Q  158 ------------gcagagtattaattggagggtacaattgaaaagaaaa 194  Q
                ||||||||||||||||||||||||||| |||||||||    
T  6747319 tggaagtagtgtgcagagtattaattggagggtacaattaaaaagaaaa 6747271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 200
Target Start/End: Original strand, 31929929 - 31929972
Alignment:
Q  157 tgcagagtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    |||| |||||||||||||||||||||||||||||||||| ||||    
T  31929929 tgcaaagtattaattggagggtacaattgaaaagaaaaaattat 31929972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 157
Target Start/End: Original strand, 44567038 - 44567098
Alignment:
Q  98 agaatgattattt-accaagttatccttattagctattgaatagttttaaaagtaatactt 157  Q
    ||||||||||||| | ||| |||||||||||| ||||||  ||||||||||||||||||||    
T  44567038 agaatgattattttatcaaattatccttattaactattggttagttttaaaagtaatactt 44567098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 200
Target Start/End: Complemental strand, 10476213 - 10476175
Alignment:
Q  162 agtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  10476213 agtattaattgaagggtacaattgaaaagaaaaagttat 10476175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 200
Target Start/End: Original strand, 13405201 - 13405239
Alignment:
Q  162 agtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  13405201 agtattaattgaagggtacaattgaaaagaaaaagttat 13405239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 200
Target Start/End: Original strand, 19105075 - 19105113
Alignment:
Q  162 agtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  19105075 agtattaattgaagggtacaattgaaaagaaaaagttat 19105113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 200
Target Start/End: Original strand, 24133204 - 24133242
Alignment:
Q  162 agtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  24133204 agtattaattgaagggtacaattgaaaagaaaaaattat 24133242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 200
Target Start/End: Original strand, 31418587 - 31418625
Alignment:
Q  162 agtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  31418587 agtattaattgaagggtacaattgaaaagaaaaagttat 31418625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 194
Target Start/End: Complemental strand, 34274873 - 34274839
Alignment:
Q  160 agagtattaattggagggtacaattgaaaagaaaa 194  Q
    ||||||||||||||||||||||||| |||||||||    
T  34274873 agagtattaattggagggtacaattaaaaagaaaa 34274839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 200
Target Start/End: Original strand, 42880008 - 42880046
Alignment:
Q  162 agtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  42880008 agtattaattgaagggtacaattgaaaagaaaaagttat 42880046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 200
Target Start/End: Original strand, 45948704 - 45948742
Alignment:
Q  162 agtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  45948704 agtattaattgaagggtacaattgaaaagaaaaagttat 45948742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 157
Target Start/End: Complemental strand, 34274937 - 34274888
Alignment:
Q  108 tttaccaagttatccttattagctattgaatagttttaaaagtaatactt 157  Q
    |||||||| ||||| |||||| ||||||  ||||||||||||||||||||    
T  34274937 tttaccaaattatctttattaactattggttagttttaaaagtaatactt 34274888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 194
Target Start/End: Complemental strand, 1742068 - 1742036
Alignment:
Q  162 agtattaattggagggtacaattgaaaagaaaa 194  Q
    ||||||||||| |||||||||||||||||||||    
T  1742068 agtattaattgaagggtacaattgaaaagaaaa 1742036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 200
Target Start/End: Original strand, 6563490 - 6563526
Alignment:
Q  164 tattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||||||| |||||||||||||||||||||| ||||    
T  6563490 tattaattgaagggtacaattgaaaagaaaaagttat 6563526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 200
Target Start/End: Original strand, 27947577 - 27947613
Alignment:
Q  164 tattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||||||| |||||||||||||||||||||| ||||    
T  27947577 tattaattgaagggtacaattgaaaagaaaaagttat 27947613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 200
Target Start/End: Original strand, 29531011 - 29531047
Alignment:
Q  164 tattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||||||| |||||||||||||||||||||| ||||    
T  29531011 tattaattgaagggtacaattgaaaagaaaaaattat 29531047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 200
Target Start/End: Complemental strand, 30312533 - 30312497
Alignment:
Q  164 tattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||||||| |||||||||||||||||||||| ||||    
T  30312533 tattaattgaagggtacaattgaaaagaaaaaattat 30312497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 58 - 200
Target Start/End: Original strand, 42571485 - 42571640
Alignment:
Q  58 ctttacacacatattaagaaatgcaaggattnnnnnnnncagaatgattattt-accaagttatccttattagctattgaatagttttaaaagtaatact 156  Q
    |||||||||||||||||||||||||| ||||         |||||| |||||| | ||| |||||||||||||||||||  |||||||||||||||||||    
T  42571485 ctttacacacatattaagaaatgcaatgattaaaagatagagaatggttattttatcaaattatccttattagctattggttagttttaaaagtaatact 42571584  T
Q  157 t------------gcagagtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    |            |||||||||||||||||||||||||||||||||||||| ||||    
T  42571585 ttggaagtagtgtgcagagtattaattggagggtacaattgaaaagaaaaagttat 42571640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 59 - 157
Target Start/End: Original strand, 44064412 - 44064511
Alignment:
Q  59 tttacacacatattaagaaatgcaaggattnnnnnnnncagaatgattattt-accaagttatccttattagctattgaatagttttaaaagtaatactt 157  Q
    ||||||||||||||||||||||||| ||||         ||||||||||||| ||||| |||||||||||||||||||  ||||||||||||||||||||    
T  44064412 tttacacacatattaagaaatgcaatgattaaaagaaagagaatgattattttaccaaattatccttattagctattggttagttttaaaagtaatactt 44064511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 59 - 200
Target Start/End: Original strand, 50038129 - 50038282
Alignment:
Q  59 tttacacacatattaagaaatgcaaggattnnnnnnnncagaatgattattt-accaagttatccttattagctattgaatagttttaaaagtaatactt 157  Q
    ||||||||||||||||||||||||| ||||         ||||||||||||| ||||| ||||||||||||  |||||  ||||||||||||||||||||    
T  50038129 tttacacacatattaagaaatgcaatgattaaaagaag-agaatgattattttaccaaattatccttattaaatattgcttagttttaaaagtaatactt 50038227  T
Q  158 ------------gcagagtattaattggagggtacaattgaaaagaaaaacttat 200  Q
                |||||||||||||||||||||||||||||||||||||| ||||    
T  50038228 tagaagtagtgtgcagagtattaattggagggtacaattgaaaagaaaaagttat 50038282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 108 - 157
Target Start/End: Complemental strand, 42886892 - 42886843
Alignment:
Q  108 tttaccaagttatccttattagctattgaatagttttaaaagtaatactt 157  Q
    |||||||| |||||||||||| ||||||| ||||||||||||||||||||    
T  42886892 tttaccaaattatccttattaactattgattagttttaaaagtaatactt 42886843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 157
Target Start/End: Complemental strand, 19115574 - 19115480
Alignment:
Q  64 acacatattaagaaatgcaaggattnnnnnnnncagaatgattattt-accaagttatccttattagctattgaatagttttaaaagtaatactt 157  Q
    |||||||||||||||||||| ||||         |||||| |||||| ||||| |||||||||||| ||||||  ||||||||||||||||||||    
T  19115574 acacatattaagaaatgcaatgattaaaagaaaaagaatggttattttaccaaattatccttattaactattggttagttttaaaagtaatactt 19115480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 200
Target Start/End: Complemental strand, 44676298 - 44676260
Alignment:
Q  162 agtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  44676298 agtattaattggagggtacaattgaaaagaaaaagttat 44676260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 200
Target Start/End: Complemental strand, 48901797 - 48901759
Alignment:
Q  162 agtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  48901797 agtattaattggagggtacaattgaaaagaaaaagttat 48901759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 200
Target Start/End: Complemental strand, 48903363 - 48903325
Alignment:
Q  162 agtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  48903363 agtattaattggagggtacaattgaaaagaaaaagttat 48903325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 157 - 194
Target Start/End: Original strand, 31583502 - 31583539
Alignment:
Q  157 tgcagagtattaattggagggtacaattgaaaagaaaa 194  Q
    |||||||||||||||||| |||||||||||||||||||    
T  31583502 tgcagagtattaattggaaggtacaattgaaaagaaaa 31583539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 156
Target Start/End: Complemental strand, 4759433 - 4759385
Alignment:
Q  108 tttaccaagttatccttattagctattgaatagttttaaaagtaatact 156  Q
    |||||||| |||||||||||| ||||||  |||||||||||||||||||    
T  4759433 tttaccaaattatccttattaactattggttagttttaaaagtaatact 4759385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 149
Target Start/End: Original strand, 31582539 - 31582591
Alignment:
Q  98 agaatgattattt-accaagttatccttattagctattgaatagttttaaaag 149  Q
    ||||||||||||| ||||| | |||||||||||||||||| ||||||||||||    
T  31582539 agaatgattattttaccaaataatccttattagctattgattagttttaaaag 31582591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 157 - 200
Target Start/End: Complemental strand, 4759073 - 4759030
Alignment:
Q  157 tgcagagtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    |||||||||||||||| | |||||||||||||||||||| ||||    
T  4759073 tgcagagtattaattgaaaggtacaattgaaaagaaaaagttat 4759030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 200
Target Start/End: Original strand, 3152879 - 3152917
Alignment:
Q  162 agtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  3152879 agtattaattgaagggtacaattgaaaagaaaaagttat 3152917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 200
Target Start/End: Complemental strand, 4392273 - 4392235
Alignment:
Q  162 agtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  4392273 agtattaattgaagggtacaattgaaaagaaaaagttat 4392235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 200
Target Start/End: Complemental strand, 27067685 - 27067647
Alignment:
Q  162 agtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  27067685 agtattaattgaagggtacaattgaaaagaaaaagttat 27067647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 200
Target Start/End: Original strand, 45213795 - 45213833
Alignment:
Q  162 agtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  45213795 agtattaattgaagggtacaattgaaaagaaaaagttat 45213833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 154
Target Start/End: Complemental strand, 45460809 - 45460763
Alignment:
Q  108 tttaccaagttatccttattagctattgaatagttttaaaagtaata 154  Q
    |||||||| |||||||||||| ||||||  |||||||||||||||||    
T  45460809 tttaccaaattatccttattaactattggttagttttaaaagtaata 45460763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 200
Target Start/End: Complemental strand, 51398087 - 51398049
Alignment:
Q  162 agtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  51398087 agtattaattgaagggtacaattgaaaagaaaaagttat 51398049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 163 - 200
Target Start/End: Complemental strand, 11393621 - 11393584
Alignment:
Q  163 gtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    |||||||||| |||||||||||||||||||||| ||||    
T  11393621 gtattaattgaagggtacaattgaaaagaaaaagttat 11393584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 193
Target Start/End: Complemental strand, 45460738 - 45460709
Alignment:
Q  164 tattaattggagggtacaattgaaaagaaa 193  Q
    ||||||||||||||||||||||||||||||    
T  45460738 tattaattggagggtacaattgaaaagaaa 45460709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 195
Target Start/End: Original strand, 50088389 - 50088422
Alignment:
Q  162 agtattaattggagggtacaattgaaaagaaaaa 195  Q
    ||||||||||| ||||||||||||||||||||||    
T  50088389 agtattaattgaagggtacaattgaaaagaaaaa 50088422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 200
Target Start/End: Original strand, 36729885 - 36729921
Alignment:
Q  164 tattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||||||| |||||||||||||||||||||| ||||    
T  36729885 tattaattgaagggtacaattgaaaagaaaaagttat 36729921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 200
Target Start/End: Complemental strand, 41850465 - 41850429
Alignment:
Q  164 tattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||||||| |||||||||||||||||||||| ||||    
T  41850465 tattaattgaagggtacaattgaaaagaaaaagttat 41850429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 58 - 156
Target Start/End: Original strand, 52023930 - 52024029
Alignment:
Q  58 ctttacacacatattaagaaatgcaaggattnnnnnnnncagaatgattattt-accaagttatccttattagctattgaatagttttaaaagtaatact 156  Q
    |||||||||||||||||||||||||| ||||         ||||||||||||| ||||| |||||||||||||||||||  |||||||||||||||||||    
T  52023930 ctttacacacatattaagaaatgcaatgattaaaagaaagagaatgattattttaccaaattatccttattagctattggttagttttaaaagtaatact 52024029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 58 - 200
Target Start/End: Complemental strand, 50249504 - 50249349
Alignment:
Q  58 ctttacacacatattaagaaatgcaaggattnnnnnnnncagaatgattattt-accaagttatccttattagctattgaatagttttaaaagtaatact 156  Q
    |||||||||||||||||||||||||| ||||         |||||| |||||| ||||| |||||||||||| ||||||  || ||||||||||||||||    
T  50249504 ctttacacacatattaagaaatgcaatgattaaaagaaagagaatggttattttaccaaattatccttattaactattggttaattttaaaagtaatact 50249405  T
Q  157 t------------gcagagtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    |            ||| |||||||||||||||||||||||||||||||||| ||||    
T  50249404 ttggaagtagtgtgcaaagtattaattggagggtacaattgaaaagaaaaagttat 50249349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 99 - 200
Target Start/End: Complemental strand, 27721111 - 27720997
Alignment:
Q  99 gaatgattattt-accaagttatccttattagctattgaatagttttaaaagtaatactt------------gcagagtattaattggagggtacaattg 185  Q
    |||||||||||| | ||| |||||||||||| ||||||| ||||||||||||||||||||            || |||||||||||||||||||||||||    
T  27721111 gaatgattattttatcaaattatccttattaactattgattagttttaaaagtaatactttggaagtagtgtgctgagtattaattggagggtacaattg 27721012  T
Q  186 aaaagaaaaacttat 200  Q
    |||||||||| ||||    
T  27721011 aaaagaaaaagttat 27720997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 157 - 200
Target Start/End: Complemental strand, 25487170 - 25487127
Alignment:
Q  157 tgcagagtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||||||||||||||||||||||||||||||||||||| ||||    
T  25487170 tgcagagtattaattggagggtacaattgaaaagaaaaagttat 25487127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 200
Target Start/End: Original strand, 26352039 - 26352193
Alignment:
Q  59 tttacacacatattaagaaatgcaaggattnnnnnnnncagaatgattattt-accaagttatccttattagctattgaatagttttaaaagtaatactt 157  Q
    |||||||||||||||||||||||||  |||         |||||| |||||| ||||| |||||||||||  ||||||  ||||||||||||||||||||    
T  26352039 tttacacacatattaagaaatgcaattattaaaagaaagagaatgtttattttaccaaattatccttattgactattggttagttttaaaagtaatactt 26352138  T
Q  158 ------------gcagagtattaattggagggtacaattgaaaagaaaaacttat 200  Q
                || ||||||||||||||||||||||||||||||||||| ||||    
T  26352139 tgaaagtagcgtgctgagtattaattggagggtacaattgaaaagaaaaagttat 26352193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 98 - 157
Target Start/End: Complemental strand, 27721227 - 27721167
Alignment:
Q  98 agaatgattattt-accaagttatccttattagctattgaatagttttaaaagtaatactt 157  Q
    ||||||||||||| | ||| |||||||||||| ||||||| ||||||||||||||||||||    
T  27721227 agaatgattattttatcaaattatccttattaactattgattagttttaaaagtaatactt 27721167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 34047307 - 34047347
Alignment:
Q  160 agagtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  34047307 agagtattaattggagggtacaattgaaaagaaaaagttat 34047347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 200
Target Start/End: Original strand, 12591155 - 12591194
Alignment:
Q  161 gagtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  12591155 gagtattaattggagggtacaattgaaaagaaaaagttat 12591194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 157
Target Start/End: Original strand, 14373371 - 14373470
Alignment:
Q  59 tttacacacatattaagaaatgcaaggattnnnnnnnncagaatgattattt-accaagttatccttattagctattgaatagttttaaaagtaatactt 157  Q
    ||||||||||||||||||||||||| ||||         |||||| |||||| ||||| |||||||||||| ||||||  ||||||||||| ||||||||    
T  14373371 tttacacacatattaagaaatgcaatgattaaaagaaaaagaatggttattttaccaaattatccttattaactattggttagttttaaaaataatactt 14373470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 200
Target Start/End: Original strand, 34032088 - 34032192
Alignment:
Q  108 tttaccaagttatccttattagctattgaatagttttaaaagtaatact------------tgcagagtattaattggagggtacaattgaaaagaaaaa 195  Q
    |||||||| |||||||||||| ||||||  |||||||||||||||||||            |||| ||||||||||||| ||||||||||||||||||||    
T  34032088 tttaccaaattatccttattaactattggttagttttaaaagtaatactttggaagtagcgtgcaaagtattaattggacggtacaattgaaaagaaaaa 34032187  T
Q  196 cttat 200  Q
     ||||    
T  34032188 attat 34032192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 200
Target Start/End: Original strand, 52024303 - 52024346
Alignment:
Q  157 tgcagagtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    |||| |||||||||||||||||||||||||||||||||| ||||    
T  52024303 tgcaaagtattaattggagggtacaattgaaaagaaaaatttat 52024346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 108 - 157
Target Start/End: Original strand, 49402879 - 49402928
Alignment:
Q  108 tttaccaagttatccttattagctattgaatagttttaaaagtaatactt 157  Q
    ||||| || |||||||||||| ||||||| ||||||||||||||||||||    
T  49402879 tttactaaattatccttattaactattgattagttttaaaagtaatactt 49402928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 200
Target Start/End: Complemental strand, 9915520 - 9915482
Alignment:
Q  162 agtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  9915520 agtattaattgaagggtacaattgaaaagaaaaatttat 9915482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 200
Target Start/End: Complemental strand, 15823111 - 15823073
Alignment:
Q  162 agtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  15823111 agtattaattgaagggtacaattgaaaagaaaaagttat 15823073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 200
Target Start/End: Original strand, 24611594 - 24611632
Alignment:
Q  162 agtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  24611594 agtattaattgaagggtacaattgaaaagaaaaagttat 24611632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 200
Target Start/End: Complemental strand, 29567973 - 29567935
Alignment:
Q  162 agtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  29567973 agtattaattgaagggtacaattgaaaagaaaaagttat 29567935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 200
Target Start/End: Original strand, 31699363 - 31699401
Alignment:
Q  162 agtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  31699363 agtattaattgaagggtacaattgaaaagaaaaaattat 31699401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 200
Target Start/End: Complemental strand, 44108676 - 44108638
Alignment:
Q  162 agtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  44108676 agtattaattgaagggtacaattgaaaagaaaaagttat 44108638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 200
Target Start/End: Complemental strand, 50094306 - 50094268
Alignment:
Q  162 agtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  50094306 agtattaattgaagggtacaattgaaaagaaaaagttat 50094268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 157
Target Start/End: Original strand, 12484636 - 12484685
Alignment:
Q  108 tttaccaagttatccttattagctattgaatagttttaaaagtaatactt 157  Q
    |||||||| |||||||||||  ||||||  ||||||||||||||||||||    
T  12484636 tttaccaaattatccttattgactattggttagttttaaaagtaatactt 12484685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 157
Target Start/End: Original strand, 14593353 - 14593402
Alignment:
Q  108 tttaccaagttatccttattagctattgaatagttttaaaagtaatactt 157  Q
    |||||||| |||||||||||| |||||   ||||||||||||||||||||    
T  14593353 tttaccaaattatccttattaactatttgttagttttaaaagtaatactt 14593402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 200
Target Start/End: Original strand, 12484704 - 12484740
Alignment:
Q  164 tattaattggagggtacaattgaaaagaaaaacttat 200  Q
    |||||||||||||||||| ||||||||||||| ||||    
T  12484704 tattaattggagggtacagttgaaaagaaaaagttat 12484740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 200
Target Start/End: Complemental strand, 43759407 - 43759371
Alignment:
Q  164 tattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||||||| |||||||||||||||||||||| ||||    
T  43759407 tattaattgaagggtacaattgaaaagaaaaaattat 43759371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 200
Target Start/End: Original strand, 49402947 - 49402983
Alignment:
Q  164 tattaattggagggtacaattgaaaagaaaaacttat 200  Q
    |||||||||||| ||||||||||||||||||| ||||    
T  49402947 tattaattggagagtacaattgaaaagaaaaagttat 49402983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 194
Target Start/End: Original strand, 49468785 - 49468817
Alignment:
Q  162 agtattaattggagggtacaattgaaaagaaaa 194  Q
    ||||||||||| |||||||||||||||||||||    
T  49468785 agtattaattgaagggtacaattgaaaagaaaa 49468817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 7e-18; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 58 - 200
Target Start/End: Original strand, 22220322 - 22220477
Alignment:
Q  58 ctttacacacatattaagaaatgcaaggattnnnnnnnncagaatgattattt-accaagttatccttattagctattgaatagttttaaaagtaatact 156  Q
    |||||||||||||||||||||||||| ||||         |||||| |||||| ||||| |||||||||||||||||||  ||||||||||||||||| |    
T  22220322 ctttacacacatattaagaaatgcaatgattaaaagaatgagaatggttattttaccaaattatccttattagctattggttagttttaaaagtaatatt 22220421  T
Q  157 t------------gcagagtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    |            ||| |||||||||||||||||||||||||||||||||| ||||    
T  22220422 ttggaagtagtgtgcatagtattaattggagggtacaattgaaaagaaaaagttat 22220477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 200
Target Start/End: Original strand, 21864386 - 21864501
Alignment:
Q  98 agaatgattattt-accaagttatccttattagctattgaatagttttaaaagtaatactt------------gcagagtattaattggagggtacaatt 184  Q
    ||||||||||||| ||||| ||||||||||||  |||||  ||||||||||||||||||||            ||||||||||||||||||| |||||||    
T  21864386 agaatgattattttaccaaattatccttattaattattggttagttttaaaagtaatactttggaagtagtgtgcagagtattaattggaggatacaatt 21864485  T
Q  185 gaaaagaaaaacttat 200  Q
    ||||||||||| ||||    
T  21864486 gaaaagaaaaagttat 21864501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 200
Target Start/End: Original strand, 21920247 - 21920362
Alignment:
Q  98 agaatgattattt-accaagttatccttattagctattgaatagttttaaaagtaatactt------------gcagagtattaattggagggtacaatt 184  Q
    ||||||||||||| ||||| ||||||||||||  |||||  ||||||||||||||||||||            ||||||||||||||||||| |||||||    
T  21920247 agaatgattattttaccaaattatccttattaattattggttagttttaaaagtaatactttggaagtagtgtgcagagtattaattggaggatacaatt 21920346  T
Q  185 gaaaagaaaaacttat 200  Q
    ||||||||||| ||||    
T  21920347 gaaaagaaaaagttat 21920362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 200
Target Start/End: Original strand, 52915545 - 52915660
Alignment:
Q  98 agaatgattattt-accaagttatccttattagctattgaatagttttaaaagtaatact------------tgcagagtattaattggagggtacaatt 184  Q
    ||||||||||||| ||||| ||||| |||||||||||||  |||||||||||||||||||            |||||||||||||||||| | |||||||    
T  52915545 agaatgattattttaccaaattatctttattagctattggttagttttaaaagtaatactttggaagtagtgtgcagagtattaattggatgatacaatt 52915644  T
Q  185 gaaaagaaaaacttat 200  Q
    ||||||||||| ||||    
T  52915645 gaaaagaaaaagttat 52915660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 200
Target Start/End: Original strand, 7906073 - 7906114
Alignment:
Q  159 cagagtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  7906073 cagagtattaattggagggtacaattgaaaagaaaaagttat 7906114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 200
Target Start/End: Complemental strand, 37624749 - 37624595
Alignment:
Q  59 tttacacacatattaagaaatgcaaggattnnnnnnnncagaatgattattt-accaagttatccttattagctattgaatagttttaaaagtaatactt 157  Q
    ||||||| ||||||||||||||||| ||||         ||||||||||||| ||||| ||||||||||||  |||||  ||||||||||| ||||||||    
T  37624749 tttacactcatattaagaaatgcaatgattaaaagaaagagaatgattattttaccaaattatccttattaattattggttagttttaaaaataatactt 37624650  T
Q  158 ------------gcagagtattaattggagggtacaattgaaaagaaaaacttat 200  Q
                ||||||||||||||||||| |||||||||||||||||| ||||    
T  37624649 ttgaagtagtgtgcagagtattaattggaggatacaattgaaaagaaaaagttat 37624595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 200
Target Start/End: Complemental strand, 4505529 - 4505376
Alignment:
Q  59 tttacacacatattaagaaatgcaaggattnnnnnnnncagaatgattattt-accaagttatccttattagctattgaatagttttaaaagtaatactt 157  Q
    |||||| |||||||||||||||||| ||||         |||||| |||||| ||||| |||||||||||| ||||||  ||||||||||| ||||||||    
T  4505529 tttacaaacatattaagaaatgcaatgattaaaagaaagagaatggttattttaccaaattatccttattaactattggttagttttaaaactaatactt 4505430  T
Q  158 ------------gcagagtattaattggagggtacaattgaaaagaaaaacttat 200  Q
                ||||||||||||| |||||||||||||||||||||||| ||||    
T  4505429 tgaaagtagtgtgcagagtattaat-ggagggtacaattgaaaagaaaaagttat 4505376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 38510323 - 38510363
Alignment:
Q  160 agagtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||||||||||||| |||||||||||||||||||| ||||    
T  38510323 agagtattaattggatggtacaattgaaaagaaaaagttat 38510363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 200
Target Start/End: Original strand, 51733463 - 51733612
Alignment:
Q  64 acacatattaagaaatgcaaggattnnnnnnnncagaatgattattt-accaagttatccttattagctattgaatagttttaaaagtaatactt----- 157  Q
    |||||||||||||||||||| ||||         |||||| |||||| ||||| |||| ||||||| ||||||  ||||||||||||||||||||         
T  51733463 acacatattaagaaatgcaatgattaaaagaaagagaatggttattttaccaaattattcttattaactattggttagttttaaaagtaatactttggaa 51733562  T
Q  158 -------gcagagtattaattggagggtacaattgaaaagaaaaacttat 200  Q
           ||||||||||||||||||||||||| | |||||||||| ||||    
T  51733563 gtagtgtgcagagtattaattggagggtacaagtaaaaagaaaaaattat 51733612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 195
Target Start/End: Original strand, 620255 - 620290
Alignment:
Q  160 agagtattaattggagggtacaattgaaaagaaaaa 195  Q
    ||||||||||||| ||||||||||||||||||||||    
T  620255 agagtattaattgaagggtacaattgaaaagaaaaa 620290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 59 - 157
Target Start/End: Original strand, 7905960 - 7906059
Alignment:
Q  59 tttacacacatattaagaaatgcaaggattnnnnnnnncagaatgattattt-accaagttatccttattagctattgaatagttttaaaagtaatactt 157  Q
    ||||||||||||||||||||||||| ||||         |||||  |||||| ||||| |||||||||||| |||||   ||||||||||||||||||||    
T  7905960 tttacacacatattaagaaatgcaatgattaaaagaaagagaattgttattttaccaaattatccttattaactatttgttagttttaaaagtaatactt 7906059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 200
Target Start/End: Complemental strand, 1819639 - 1819601
Alignment:
Q  162 agtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  1819639 agtattaattgaagggtacaattgaaaagaaaaatttat 1819601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 200
Target Start/End: Complemental strand, 2493179 - 2493141
Alignment:
Q  162 agtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  2493179 agtattaattgaagggtacaattgaaaagaaaaaattat 2493141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 200
Target Start/End: Original strand, 10573234 - 10573272
Alignment:
Q  162 agtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  10573234 agtattaattgaagggtacaattgaaaagaaaaagttat 10573272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 200
Target Start/End: Complemental strand, 18430066 - 18430028
Alignment:
Q  162 agtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  18430066 agtattaattgaagggtacaattgaaaagaaaaagttat 18430028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 200
Target Start/End: Complemental strand, 24940956 - 24940918
Alignment:
Q  162 agtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  24940956 agtattaattgaagggtacaattgaaaagaaaaagttat 24940918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 200
Target Start/End: Complemental strand, 37654486 - 37654448
Alignment:
Q  162 agtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  37654486 agtattaattgaagggtacaattgaaaagaaaaagttat 37654448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 200
Target Start/End: Original strand, 40345427 - 40345465
Alignment:
Q  162 agtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  40345427 agtattaattgaagggtacaattgaaaagaaaaaattat 40345465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 200
Target Start/End: Original strand, 45043668 - 45043706
Alignment:
Q  162 agtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  45043668 agtattaattgaagggtacaattgaaaagaaaaaattat 45043706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 200
Target Start/End: Complemental strand, 47817815 - 47817777
Alignment:
Q  162 agtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  47817815 agtattaattgaagggtacaattgaaaagaaaaagttat 47817777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 191 - 243
Target Start/End: Complemental strand, 13128492 - 13128439
Alignment:
Q  191 aaaaacttatgggttaataggcatttaccc-ctgtaatattggtcacctttggt 243  Q
    ||||||||| |||||||||||||||||||| || |||||| |||||| ||||||    
T  13128492 aaaaacttaagggttaataggcatttaccctctataatataggtcacttttggt 13128439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 163 - 200
Target Start/End: Original strand, 19451292 - 19451329
Alignment:
Q  163 gtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    |||||||||| |||||||||||||||||||||| ||||    
T  19451292 gtattaattgaagggtacaattgaaaagaaaaagttat 19451329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 200
Target Start/End: Complemental strand, 11364301 - 11364265
Alignment:
Q  164 tattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||||||| |||||||||||||||||||||| ||||    
T  11364301 tattaattgaagggtacaattgaaaagaaaaagttat 11364265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 200
Target Start/End: Complemental strand, 19930789 - 19930753
Alignment:
Q  164 tattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||||||| |||||||||||||||||||||| ||||    
T  19930789 tattaattgaagggtacaattgaaaagaaaaagttat 19930753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 194
Target Start/End: Complemental strand, 30261336 - 30261304
Alignment:
Q  162 agtattaattggagggtacaattgaaaagaaaa 194  Q
    ||||||||||| |||||||||||||||||||||    
T  30261336 agtattaattgaagggtacaattgaaaagaaaa 30261304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 157
Target Start/End: Original strand, 43337750 - 43337810
Alignment:
Q  98 agaatgattattt-accaagttatccttattagctattgaatagttttaaaagtaatactt 157  Q
    ||||||||||||| | ||| ||||| |||||| ||||||  ||||||||||||||||||||    
T  43337750 agaatgattattttatcaaattatctttattaactattggttagttttaaaagtaatactt 43337810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 200
Target Start/End: Complemental strand, 50203149 - 50203113
Alignment:
Q  164 tattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||||||| |||||||||||||||||||||| ||||    
T  50203149 tattaattgaagggtacaattgaaaagaaaaagttat 50203113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 200
Target Start/End: Original strand, 52848136 - 52848172
Alignment:
Q  164 tattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||||||| |||||||||||||||||||||| ||||    
T  52848136 tattaattgaagggtacaattgaaaagaaaaaattat 52848172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 200
Target Start/End: Original strand, 52957872 - 52957908
Alignment:
Q  164 tattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||||||| |||||||||||||||||||||| ||||    
T  52957872 tattaattgaagggtacaattgaaaagaaaaagttat 52957908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 200
Target Start/End: Original strand, 56373659 - 56373695
Alignment:
Q  164 tattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||||||| |||||||||||||||||||||| ||||    
T  56373659 tattaattgaagggtacaattgaaaagaaaaaattat 56373695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 59 - 200
Target Start/End: Original strand, 15160406 - 15160560
Alignment:
Q  59 tttacacacatattaagaaatgcaaggattnnnnnnnncagaatgattattt-accaagttatccttattagctattgaatagttttaaaagtaatactt 157  Q
    ||||||||||||||||||||||||| ||||         |||||| |||||| ||||| |||||||||||| ||||||  ||||||||||||||||| ||    
T  15160406 tttacacacatattaagaaatgcaatgattaaaagaaagagaatggttattttaccaaattatccttattaactattggttagttttaaaagtaatattt 15160505  T
Q  158 ------------gcagagtattaattggagggtacaattgaaaagaaaaacttat 200  Q
                |||||||||||||||||||||||||||||||||||||| ||||    
T  15160506 tggaagtagtgtgcagagtattaattggagggtacaattgaaaagaaaaagttat 15160560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 58 - 156
Target Start/End: Original strand, 396173 - 396272
Alignment:
Q  58 ctttacacacatattaagaaatgcaaggattnnnnnnnncagaatgattattt-accaagttatccttattagctattgaatagttttaaaagtaatact 156  Q
    |||||||||||||||||||||||||| ||||         ||||||||||||| ||||| |||||||||||| ||||||  |||||||||||||||||||    
T  396173 ctttacacacatattaagaaatgcaatgattaaaagaaagagaatgattattttaccaaattatccttattaactattggttagttttaaaagtaatact 396272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 59 - 200
Target Start/End: Original strand, 37559493 - 37559647
Alignment:
Q  59 tttacacacatattaagaaatgcaaggattnnnnnnnncagaatgattatttacca-agttatccttattagctattgaatagttttaaaagtaatactt 157  Q
    ||||||||||||||||||||||||| ||||         |||||||||||||  || | |||| ||||||| ||||||  ||||||||||||||||||||    
T  37559493 tttacacacatattaagaaatgcaatgattaaaataaagagaatgattattttacataattattcttattaactattggttagttttaaaagtaatactt 37559592  T
Q  158 ------------gcagagtattaattggagggtacaattgaaaagaaaaacttat 200  Q
                |||||||||||||||||||||||||||||||||||||| ||||    
T  37559593 tgaaaatagtgtgcagagtattaattggagggtacaattgaaaagaaaaagttat 37559647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 100 - 200
Target Start/End: Complemental strand, 17656059 - 17655946
Alignment:
Q  100 aatgattattt-accaagttatccttattagctattgaatagttttaaaagtaatactt------------gcagagtattaattggagggtacaattga 186  Q
    ||||||||||| ||||| ||||||||||||| |||||  ||||||||||||||||||||            |||||||||||||||||||||||| ||||    
T  17656059 aatgattattttaccaaattatccttattagttattggttagttttaaaagtaatactttgcaagtagtgtgcagagtattaattggagggtacagttga 17655960  T
Q  187 aaagaaaaacttat 200  Q
    ||||||||| ||||    
T  17655959 aaagaaaaagttat 17655946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 200
Target Start/End: Complemental strand, 36921439 - 36921396
Alignment:
Q  157 tgcagagtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    |||||||||||||||||| |||||||||||||||||||| ||||    
T  36921439 tgcagagtattaattggaaggtacaattgaaaagaaaaaattat 36921396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 157
Target Start/End: Original strand, 39765820 - 39765919
Alignment:
Q  59 tttacacacatattaagaaatgcaaggattnnnnnnnncagaatgattattt-accaagttatccttattagctattgaatagttttaaaagtaatactt 157  Q
    ||||||||||||||||||||| ||| ||||         |||||| |||||| ||||| |||||||||||| ||||||  ||||||||||||||||||||    
T  39765820 tttacacacatattaagaaatacaatgattaaaagaaagagaatgcttattttaccaaattatccttattaactattggttagttttaaaagtaatactt 39765919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 200
Target Start/End: Complemental strand, 40362517 - 40362474
Alignment:
Q  157 tgcagagtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||    
T  40362517 tgcagagtattaattggagggtaaaattgaaaagaaaaagttat 40362474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 200
Target Start/End: Original strand, 4760634 - 4760672
Alignment:
Q  162 agtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  4760634 agtattaattgaagggtacaattgaaaagaaaaaattat 4760672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 200
Target Start/End: Complemental strand, 19438313 - 19438275
Alignment:
Q  162 agtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  19438313 agtattaattgaagggtacaattgaaaagaaaaagttat 19438275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 200
Target Start/End: Complemental strand, 19574464 - 19574426
Alignment:
Q  162 agtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  19574464 agtattaattgaagggtacaattgaaaagaaaaagttat 19574426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 200
Target Start/End: Complemental strand, 39463336 - 39463298
Alignment:
Q  162 agtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  39463336 agtattaattgaagggtacaattgaaaagaaaaagttat 39463298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 200
Target Start/End: Original strand, 39698742 - 39698780
Alignment:
Q  162 agtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  39698742 agtattaattgaagggtacaattgaaaagaaaaagttat 39698780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 195
Target Start/End: Complemental strand, 34156612 - 34156579
Alignment:
Q  162 agtattaattggagggtacaattgaaaagaaaaa 195  Q
    ||||||||||| ||||||||||||||||||||||    
T  34156612 agtattaattgaagggtacaattgaaaagaaaaa 34156579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 200
Target Start/End: Complemental strand, 4989553 - 4989517
Alignment:
Q  164 tattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||||||| |||||||||||||||||||||| ||||    
T  4989553 tattaattgaagggtacaattgaaaagaaaaagttat 4989517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 200
Target Start/End: Original strand, 5295484 - 5295520
Alignment:
Q  164 tattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||||||| |||||||||||||||||||||| ||||    
T  5295484 tattaattgaagggtacaattgaaaagaaaaaattat 5295520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 58 - 200
Target Start/End: Complemental strand, 29400139 - 29399985
Alignment:
Q  58 ctttacacacatattaagaaatgcaaggattnnnnnnnncagaatgattattt-accaagttatccttattagctattgaatagttttaaaagtaatact 156  Q
    |||||||||||||||||||||||||| ||||         |||||| |||||| ||||| ||||||||||||| |||||  ||||||||| || ||||||    
T  29400139 ctttacacacatattaagaaatgcaatgattaaaagaaagagaatggttattttaccaaattatccttattagttattggttagttttaatagcaatact 29400040  T
Q  157 t-----------gcagagtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    |           |||||||||||||||||||||||||||||||||||||| ||||    
T  29400039 ttggagtagtgtgcagagtattaattggagggtacaattgaaaagaaaaaattat 29399985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 59 - 200
Target Start/End: Original strand, 4850455 - 4850609
Alignment:
Q  59 tttacacacatattaagaaatgcaaggattnnnnnnnncagaatgattattt-accaagttatccttattagctattgaatagttttaaaagtaatactt 157  Q
    ||||||||||||||||||||||||| ||||         |||||| |||||| ||||| |||||||||||| ||||||  ||||||||||||||||| ||    
T  4850455 tttacacacatattaagaaatgcaatgattaaaagaaagagaatggttattttaccaaattatccttattaactattggttagttttaaaagtaatattt 4850554  T
Q  158 ------------gcagagtattaattggagggtacaattgaaaagaaaaacttat 200  Q
                ||||||||||||||||| |||||||||||||||||||| ||||    
T  4850555 tggaagtagtgtgcagagtattaattggatggtacaattgaaaagaaaaagttat 4850609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 59 - 156
Target Start/End: Complemental strand, 32429480 - 32429382
Alignment:
Q  59 tttacacacatattaagaaatgcaaggattnnnnnnnncagaatgattattt-accaagttatccttattagctattgaatagttttaaaagtaatact 156  Q
    ||||||||||||||||||||||||| ||||         ||||||||||||| ||||| ||||| |||||| ||||||  |||||||||||||||||||    
T  32429480 tttacacacatattaagaaatgcaatgattaaaagaaagagaatgattattttaccaaattatctttattaactattggttagttttaaaagtaatact 32429382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 200
Target Start/End: Complemental strand, 234111 - 234073
Alignment:
Q  162 agtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  234111 agtattaattgaagggtacaattgaaaagaaaaagttat 234073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 200
Target Start/End: Complemental strand, 1135002 - 1134964
Alignment:
Q  162 agtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  1135002 agtattaattgaagggtacaattgaaaagaaaaagttat 1134964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 200
Target Start/End: Original strand, 29713482 - 29713520
Alignment:
Q  162 agtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  29713482 agtattaattgaagggtacaattgaaaagaaaaagttat 29713520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 200
Target Start/End: Complemental strand, 32193779 - 32193741
Alignment:
Q  162 agtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  32193779 agtattaattgaagggtacaattgaaaagaaaaaattat 32193741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 200
Target Start/End: Original strand, 10520717 - 10520753
Alignment:
Q  164 tattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||||||| |||||||||||||||||||||| ||||    
T  10520717 tattaattgaagggtacaattgaaaagaaaaaattat 10520753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 157
Target Start/End: Complemental strand, 19689292 - 19689252
Alignment:
Q  117 ttatccttattagctattgaatagttttaaaagtaatactt 157  Q
    |||||||||||| ||||||  ||||||||||||||||||||    
T  19689292 ttatccttattaactattggttagttttaaaagtaatactt 19689252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 58 - 157
Target Start/End: Complemental strand, 27986232 - 27986132
Alignment:
Q  58 ctttacacacatattaagaaatgcaaggattnnnnnnnncagaatgattattt-accaagttatccttattagctattgaatagttttaaaagtaatact 156  Q
    ||||||||||||||||||||||||||  |||         |||||| |||||| ||||| |||||||||||||||||||| |||||||||||||||||||    
T  27986232 ctttacacacatattaagaaatgcaattattaaaataaagagaatggttattttaccaaattatccttattagctattgattagttttaaaagtaatact 27986133  T
Q  157 t 157  Q
    |    
T  27986132 t 27986132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 58 - 157
Target Start/End: Complemental strand, 28072764 - 28072664
Alignment:
Q  58 ctttacacacatattaagaaatgcaaggattnnnnnnnncagaatgattattt-accaagttatccttattagctattgaatagttttaaaagtaatact 156  Q
    ||||||||||||||||||||||||||  |||         |||||| |||||| ||||| |||||||||||||||||||| |||||||||||||||||||    
T  28072764 ctttacacacatattaagaaatgcaattattaaaataaagagaatggttattttaccaaattatccttattagctattgattagttttaaaagtaatact 28072665  T
Q  157 t 157  Q
    |    
T  28072664 t 28072664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 59 - 200
Target Start/End: Original strand, 17695785 - 17695939
Alignment:
Q  59 tttacacacatattaagaaatgcaaggattnnnnnnnncagaatgattattt-accaagttatccttattagctattgaatagttttaaaagtaatactt 157  Q
    ||||||||||||||||||||||||  ||||         |||||| |||||| ||||| ||||| |||||| ||||||  ||||||||||||||||||||    
T  17695785 tttacacacatattaagaaatgcagtgattaagagaatgagaatggttattttaccaaattatctttattaactattggttagttttaaaagtaatactt 17695884  T
Q  158 ------------gcagagtattaattggagggtacaattgaaaagaaaaacttat 200  Q
                |||||||||||||||||||||||||||||||||||||| ||||    
T  17695885 tggaagtagtgtgcagagtattaattggagggtacaattgaaaagaaaaagttat 17695939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 108 - 200
Target Start/End: Complemental strand, 14286074 - 14285977
Alignment:
Q  108 tttaccaagttatccttattagctattgaatagttttaaaagtaatactt-----gcagagtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    |||| ||| |||||||||||| ||||||  ||||||||||||| ||||||     | || ||||||||||||||||||||||||||| ||||| ||||    
T  14286074 tttatcaaattatccttattaactattggttagttttaaaagttatactttgaaagtagtgtattaattggagggtacaattgaaaaaaaaaagttat 14285977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 200
Target Start/End: Original strand, 22620409 - 22620448
Alignment:
Q  161 gagtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  22620409 gagtattaattggagggtacaattgaaaagaaaaagttat 22620448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 200
Target Start/End: Original strand, 43427358 - 43427401
Alignment:
Q  157 tgcagagtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    |||| |||||||||||||||||||||||||||||||||| ||||    
T  43427358 tgcaaagtattaattggagggtacaattgaaaagaaaaagttat 43427401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 108 - 157
Target Start/End: Complemental strand, 35799345 - 35799296
Alignment:
Q  108 tttaccaagttatccttattagctattgaatagttttaaaagtaatactt 157  Q
    |||||||| |||||||||||| ||||||  ||||||||||||||||||||    
T  35799345 tttaccaaattatccttattaactattggttagttttaaaagtaatactt 35799296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 157
Target Start/End: Complemental strand, 5717666 - 5717606
Alignment:
Q  98 agaatgattattt-accaagttatccttattagctattgaatagttttaaaagtaatactt 157  Q
    ||||||||||||| ||||| ||||||||||||  |||||  ||||||||||||||||||||    
T  5717666 agaatgattattttaccaaattatccttattaaatattggttagttttaaaagtaatactt 5717606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 157 - 200
Target Start/End: Original strand, 16463103 - 16463146
Alignment:
Q  157 tgcagagtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||| |||||||||| |||||||||||||||||||||| ||||    
T  16463103 tgcagggtattaattgaagggtacaattgaaaagaaaaagttat 16463146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 200
Target Start/End: Original strand, 441307 - 441345
Alignment:
Q  162 agtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  441307 agtattaattgaagggtacaattgaaaagaaaaagttat 441345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 200
Target Start/End: Original strand, 4658309 - 4658347
Alignment:
Q  162 agtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  4658309 agtattaattgaagggtacaattgaaaagaaaaaattat 4658347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 200
Target Start/End: Complemental strand, 12342170 - 12342132
Alignment:
Q  162 agtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  12342170 agtattaattgaagggtacaattgaaaagaaaaagttat 12342132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 200
Target Start/End: Original strand, 18719508 - 18719546
Alignment:
Q  162 agtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  18719508 agtattaattgaagggtacaattgaaaagaaaaagttat 18719546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 200
Target Start/End: Original strand, 27964446 - 27964484
Alignment:
Q  162 agtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  27964446 agtattaattgaagggtacaattgaaaagaaaaagttat 27964484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 200
Target Start/End: Original strand, 36685816 - 36685854
Alignment:
Q  162 agtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  36685816 agtattaattgaagggtacaattgaaaagaaaaaattat 36685854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 195
Target Start/End: Original strand, 4051779 - 4051812
Alignment:
Q  162 agtattaattggagggtacaattgaaaagaaaaa 195  Q
    ||||||||||||| ||||||||||||||||||||    
T  4051779 agtattaattggaaggtacaattgaaaagaaaaa 4051812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 157
Target Start/End: Original strand, 16463042 - 16463091
Alignment:
Q  108 tttaccaagttatccttattagctattgaatagttttaaaagtaatactt 157  Q
    |||||||| |||||||| ||| ||||||  ||||||||||||||||||||    
T  16463042 tttaccaaattatccttgttaactattggttagttttaaaagtaatactt 16463091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 153
Target Start/End: Complemental strand, 16792629 - 16792584
Alignment:
Q  108 tttaccaagttatccttattagctattgaatagttttaaaagtaat 153  Q
    |||||||| |||||||||||| ||||||  ||||||||||||||||    
T  16792629 tttaccaaattatccttattaactattggttagttttaaaagtaat 16792584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 163 - 200
Target Start/End: Original strand, 16807594 - 16807631
Alignment:
Q  163 gtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    |||||||||| |||||||||||||||||||||| ||||    
T  16807594 gtattaattgaagggtacaattgaaaagaaaaaattat 16807631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 163 - 200
Target Start/End: Original strand, 16846875 - 16846912
Alignment:
Q  163 gtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    |||||||||| |||||||||||||||||||||| ||||    
T  16846875 gtattaattgaagggtacaattgaaaagaaaaaattat 16846912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 157
Target Start/End: Original strand, 43427297 - 43427346
Alignment:
Q  108 tttaccaagttatccttattagctattgaatagttttaaaagtaatactt 157  Q
    |||||||| ||||||||||||||||||   ||||||||||| ||||||||    
T  43427297 tttaccaaattatccttattagctattagttagttttaaaaataatactt 43427346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 200
Target Start/End: Complemental strand, 7644721 - 7644685
Alignment:
Q  164 tattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||||||| |||||||||||||||||||||| ||||    
T  7644721 tattaattgaagggtacaattgaaaagaaaaagttat 7644685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 200
Target Start/End: Original strand, 45081978 - 45082014
Alignment:
Q  164 tattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||||||| |||||||||||||||||||||| ||||    
T  45081978 tattaattgaagggtacaattgaaaagaaaaaattat 45082014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 200
Target Start/End: Original strand, 9717 - 9755
Alignment:
Q  162 agtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  9717 agtattaattgaagggtacaattgaaaagaaaaagttat 9755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 200
Target Start/End: Original strand, 3580 - 3618
Alignment:
Q  162 agtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  3580 agtattaattgaagggtacaattgaaaagaaaaagttat 3618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 200
Target Start/End: Original strand, 24816 - 24854
Alignment:
Q  162 agtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  24816 agtattaattgaagggtacaattgaaaagaaaaagttat 24854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 200
Target Start/End: Original strand, 21157 - 21195
Alignment:
Q  162 agtattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  21157 agtattaattgaagggtacaattgaaaagaaaaaattat 21195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 200
Target Start/End: Complemental strand, 4216 - 4180
Alignment:
Q  164 tattaattggagggtacaattgaaaagaaaaacttat 200  Q
    ||||||||| |||||||||||||||||||||| ||||    
T  4216 tattaattgaagggtacaattgaaaagaaaaaattat 4180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University