View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1244_high_6 (Length: 479)
Name: NF1244_high_6
Description: NF1244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1244_high_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 4 - 450
Target Start/End: Complemental strand, 16701773 - 16701324
Alignment:
| Q |
4 |
atctccaacaatatttccttgtattcatatctttccatttcatcacaagctttagtgtgatgnnnnnnn-cctctataggtcggtgaaataggtctatat |
102 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
16701773 |
atctccaacaatatttcctagtattcatatctttccatttcatcacaagctttagtgtgatgttttttttcctctataggtcggtgaaataggtctatat |
16701674 |
T |
|
| Q |
103 |
atagagactttgtgattctatagagtactcagtttttgagagttggtgaaaggtttgtgagtaaagaaaaatgacttcaatggaattgaggcaagccttt |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16701673 |
atagagactttgtgattctatagagtactcagtttttgagagttggtgaaaggtttgtgagtaaagaaaaatgacttcaatggaattgaggcaagccttt |
16701574 |
T |
|
| Q |
203 |
gctggccttctcactctctcaatgttcataatgcttggtaatatgatcaagaaggaccattttgattatgcagttgaagatgtaagttactcactcccat |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16701573 |
gctggccttctcactctctcaatgttcataatgcttggtaatatgatcaagaaggaccattttgattatgcagttgaagatgtaagttactcactcccat |
16701474 |
T |
|
| Q |
303 |
cacctatgtttacaagtttgattgctttcnnnnnnnnnnnnnncattatgtatgatgagttgtcattgtttccttctcaactatatgtgatatttgaaat |
402 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16701473 |
cacctatgtttacaagtttgattgctttctctttttagtttttcattatgtatgatgagttttcattgtttccttctcaactatatgtgatatttgaaat |
16701374 |
T |
|
| Q |
403 |
tcc--nnnnnnnnnaatgtcaatatattctactatgcattagaatatttt |
450 |
Q |
| |
|
| | ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
16701373 |
ttctttttttttttaatgtcaatatattcgactatgcattagaatatttt |
16701324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University