View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1244_high_9 (Length: 461)

Name: NF1244_high_9
Description: NF1244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1244_high_9
NF1244_high_9
[»] chr4 (40 HSPs)
chr4 (1-235)||(7773460-7773694)
chr4 (5-235)||(7765834-7766064)
chr4 (5-212)||(7786679-7786886)
chr4 (88-228)||(7877945-7878085)
chr4 (2-126)||(7790381-7790505)
chr4 (1-126)||(7771696-7771821)
chr4 (9-230)||(7237386-7237601)
chr4 (3-75)||(7878735-7878807)
chr4 (2-76)||(48853032-48853106)
chr4 (1-73)||(7908656-7908728)
chr4 (125-236)||(7908528-7908639)
chr4 (21-128)||(45365875-45365982)
chr4 (1-66)||(7813838-7813903)
chr4 (2-75)||(49043804-49043877)
chr4 (5-73)||(45371713-45371781)
chr4 (9-125)||(48156072-48156188)
chr4 (5-67)||(48864395-48864457)
chr4 (1-66)||(7800998-7801063)
chr4 (11-68)||(48147358-48147415)
chr4 (6-67)||(49038518-49038579)
chr4 (1-128)||(48870859-48870986)
chr4 (1-128)||(48876163-48876290)
chr4 (1-128)||(48886545-48886672)
chr4 (8-75)||(50666667-50666734)
chr4 (8-128)||(37826632-37826752)
chr4 (5-69)||(45384531-45384595)
chr4 (16-66)||(48903316-48903366)
chr4 (2-76)||(49048191-49048265)
chr4 (1-64)||(7823332-7823395)
chr4 (18-76)||(48861639-48861697)
chr4 (36-217)||(48898953-48899131)
chr4 (2-67)||(48863625-48863690)
chr4 (2-66)||(47208238-47208302)
chr4 (13-53)||(48735058-48735098)
chr4 (18-65)||(50672860-50672907)
chr4 (155-218)||(7771610-7771673)
chr4 (155-218)||(7790295-7790358)
chr4 (21-56)||(48734174-48734209)
chr4 (167-212)||(50669300-50669345)
chr4 (171-211)||(37826798-37826838)
[»] chr5 (6 HSPs)
chr5 (8-119)||(9120071-9120182)
chr5 (23-119)||(179366-179462)
chr5 (5-67)||(42561972-42562034)
chr5 (2-71)||(29688485-29688554)
chr5 (8-71)||(29712083-29712146)
chr5 (9-63)||(29696600-29696654)
[»] chr8 (7 HSPs)
chr8 (27-203)||(4962180-4962357)
chr8 (5-211)||(15349102-15349305)
chr8 (9-211)||(12195543-12195742)
chr8 (9-211)||(12439971-12440170)
chr8 (18-68)||(4031578-4031628)
chr8 (9-211)||(12200561-12200760)
chr8 (9-211)||(12444989-12445188)
[»] chr7 (3 HSPs)
chr7 (5-77)||(48884174-48884246)
chr7 (20-71)||(30130916-30130967)
chr7 (10-71)||(30165853-30165914)
[»] chr3 (4 HSPs)
chr3 (9-211)||(11005571-11005764)
chr3 (9-70)||(11015134-11015195)
chr3 (9-66)||(11024146-11024203)
chr3 (5-128)||(47451539-47451662)
[»] chr6 (4 HSPs)
chr6 (11-74)||(21016174-21016237)
chr6 (5-63)||(21979267-21979325)
chr6 (161-211)||(21979423-21979473)
chr6 (20-60)||(14197337-14197377)
[»] chr1 (7 HSPs)
chr1 (6-61)||(24367531-24367586)
chr1 (6-73)||(24416132-24416199)
chr1 (8-73)||(24310570-24310635)
chr1 (5-58)||(24323139-24323192)
chr1 (5-73)||(24340765-24340833)
chr1 (5-73)||(24353130-24353198)
chr1 (5-68)||(24369800-24369863)


Alignment Details
Target: chr4 (Bit Score: 183; Significance: 8e-99; HSPs: 40)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 7773460 - 7773694
Alignment:
Q  1 cagaaagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatcatcagcattatccttagcccatacact 100  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  7773460 cagaaagaacaagagatttaatccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatcattagcattatccttagcccatacact 7773559  T
Q  101 aagatattctccaaataccgacaaaccagaatgtactaatgctctatggtcaacatcatttggaagaggcatctcaaacaatttcctttccattaaatca 200  Q
    ||||||||||||||||||| |||||||||||||||| ||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  7773560 aagatattctccaaatacccacaaaccagaatgtaccaatgcactatggtgaacattatttggaagaggcatctcaaacaatttcctttccattaaatca 7773659  T
Q  201 aaggcaacaatgccattccaacctaaatcatgacg 235  Q
    |||| ||||||  ||||||||| ||||||| ||||    
T  7773660 aaggaaacaattacattccaacgtaaatcacgacg 7773694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 5 - 235
Target Start/End: Complemental strand, 7766064 - 7765834
Alignment:
Q  5 aagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatcatcagcattatccttagcccatacactaaga 104  Q
    ||||||||| || |||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||| || | |||||||| |||||| ||| |||    
T  7766064 aagaacaagtgtcttagtccatgacgaatacactttgtattctttcatcacccatatttcaattgtatcattagtagtatccttaacccatatactgaga 7765965  T
Q  105 tattctccaaataccgacaaaccagaatgtactaatgctctatggtcaacatcatttggaagaggcatctcaaacaatttcctttccattaaatcaaagg 204  Q
     |||||||| ||||| |||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||     
T  7765964 aattctccagatacccacaaaccagaatgtaccaatgctgtgtggtcaacatcatttggaagaggcatctcaaacaatatcctttccgttaaatcaaagc 7765865  T
Q  205 caacaatgccattccaacctaaatcatgacg 235  Q
    |||||||| ||| | || ||| |||||||||    
T  7765864 caacaatgacatccaaagctatatcatgacg 7765834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 5 - 212
Target Start/End: Complemental strand, 7786886 - 7786679
Alignment:
Q  5 aagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatcatcagcattatccttagcccatacactaaga 104  Q
    |||||||||||| ||| |||||||  ||||||| |||||||||||||||||||||||||||| |||||||| || | |||||||| |||||| ||| |||    
T  7786886 aagaacaagagtcttattccaagataaatgcacgttgtattctttcatcacccatatttcaattgtatcattagtagtatccttaacccatatactgaga 7786787  T
Q  105 tattctccaaataccgacaaaccagaatgtactaatgctctatggtcaacatcatttggaagaggcatctcaaacaatttcctttccattaaatcaaagg 204  Q
     |||| ||| ||||| |||||||||||||||| ||  || | |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||     
T  7786786 aattccccagatacccacaaaccagaatgtaccaactctgtgtggtcaacatcatttggaagaggcatctcaaacaatatcctttccgttaaatcaaagc 7786687  T
Q  205 caacaatg 212  Q
    ||||||||    
T  7786686 caacaatg 7786679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 88 - 228
Target Start/End: Complemental strand, 7878085 - 7877945
Alignment:
Q  88 tagcccatacactaagatattctccaaataccgacaaaccagaatgtactaatgctctatggtcaacatcatttggaagaggcatctcaaacaatttcct 187  Q
    ||||||||| ||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |    
T  7878085 tagcccatagactgagaaattctccaaatacccacaaaccagaatgtactaatgctctatggtcaacattatttggaagaggcatctcaaacaatttctt 7877986  T
Q  188 ttccattaaatcaaaggcaacaatgccattccaacctaaat 228  Q
    ||||||||||||||||| || |||| || ||||||||||||    
T  7877985 ttccattaaatcaaaggtaagaatgacaatccaacctaaat 7877945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 2 - 126
Target Start/End: Complemental strand, 7790505 - 7790381
Alignment:
Q  2 agaaagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatcatcagcattatccttagcccatacacta 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||| ||||||||| |||| |||     
T  7790505 agaaagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaattgtatcattatcataatccttagcgcataaactg 7790406  T
Q  102 agatattctccaaataccgacaaac 126  Q
    ||| |||||||||||||| ||||||    
T  7790405 agaaattctccaaatacccacaaac 7790381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 7771821 - 7771696
Alignment:
Q  1 cagaaagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatcatcagcattatccttagcccatacact 100  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||| | ||| ||||||||| |||| |||    
T  7771821 cagaaagaacaagagttttagtccatgacgaatgcactttgtattctttcatcacccatattacaattgtatcattatcataatccttagcgcataaact 7771722  T
Q  101 aagatattctccaaataccgacaaac 126  Q
     ||| |||||||||||||| ||||||    
T  7771721 gagaaattctccaaatacccacaaac 7771696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 9 - 230
Target Start/End: Original strand, 7237386 - 7237601
Alignment:
Q  9 acaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatcatcagcattatccttagcccatacactaagatatt 108  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||| |||||||| | ||| ||||| |||||||| ||| ||| |||    
T  7237386 acaagagttttagtccaaaacgaatgcattttgtattctttcatcacccatattacaattgtatcattatcataatcctgagcccatagactgagaaatt 7237485  T
Q  109 ctccaaataccgacaaaccagaatgtactaatgctctatggtcaacatcatttggaagaggcatctcaaacaatttcctttccattaaatcaaaggcaac 208  Q
    ||||||||||| ||| |  | || | |       ||||||||||| |||| |||||| |||||||||||||  |||| |||||||||||||||  |||||    
T  7237486 ctccaaatacccacatattataaagaa------atctatggtcaaaatcacttggaacaggcatctcaaacgttttcttttccattaaatcaagcgcaac 7237579  T
Q  209 aatgccattccaacctaaatca 230  Q
     ||| ||| | || ||||||||    
T  7237580 tatgacatccaaatctaaatca 7237601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 7878807 - 7878735
Alignment:
Q  3 gaaagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatcat 75  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  7878807 gaaagaacaagagttttaatccaagatgaatgcactttgtattctttcatcacccatatttcaactgtatcat 7878735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 2 - 76
Target Start/End: Complemental strand, 48853106 - 48853032
Alignment:
Q  2 agaaagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatcatc 76  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  48853106 agaaagaacaagagtcttagtccaagacgaacgcactttgtattctttcatgacccatatttcaactgtatcatc 48853032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 7908728 - 7908656
Alignment:
Q  1 cagaaagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatc 73  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  7908728 cagaaagaacaagagttttattccaagatgaatgcactttgtattctttcatcacccatatttcaagtgtatc 7908656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 125 - 236
Target Start/End: Complemental strand, 7908639 - 7908528
Alignment:
Q  125 accagaatgtactaatgctctatggtcaacatcatttggaagaggcatctcaaacaatttcctttccattaaatcaaaggcaacaatgccattccaacct 224  Q
    |||||||||| || ||||||| ||| ||| |||| |||||| ||| ||||||||||| |||||||||||||||||||||||||||||| || || |||||    
T  7908639 accagaatgtcctgatgctctgtggacaaaatcacttggaataggtatctcaaacaacttcctttccattaaatcaaaggcaacaatgacagtcaaacct 7908540  T
Q  225 aaatcatgacgt 236  Q
    |||||| |||||    
T  7908539 aaatcacgacgt 7908528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 21 - 128
Target Start/End: Original strand, 45365875 - 45365982
Alignment:
Q  21 gtccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatcatcagcattatccttagcccatacactaagatattctccaaataccg 120  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||||||||||| | ||| |||| ||||||| | ||| | | ||||||||||||||     
T  45365875 gtccaagacgaacgcactttatattctttcatcacccatatttcaactgtatcattatcataatccatagcccaaaaactgaaaaattctccaaataccc 45365974  T
Q  121 acaaacca 128  Q
    ||||||||    
T  45365975 acaaacca 45365982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 7813903 - 7813838
Alignment:
Q  1 cagaaagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaa 66  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||    
T  7813903 cagaaagaacaagagttttattccaagacgaatgcactttgtattctttcaacacccatatttcaa 7813838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 2 - 75
Target Start/End: Original strand, 49043804 - 49043877
Alignment:
Q  2 agaaagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatcat 75  Q
    ||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  49043804 agaaaaaacaagagtcttagtccatgacgaatgcactttgtattctttcatcacccatatttcaactatatcat 49043877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 5 - 73
Target Start/End: Original strand, 45371713 - 45371781
Alignment:
Q  5 aagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatc 73  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  45371713 aagaacaaaagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaactgtatc 45371781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 9 - 125
Target Start/End: Original strand, 48156072 - 48156188
Alignment:
Q  9 acaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatcatcagcattatccttagcccatacactaagatatt 108  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| | |||| |||   |||   |||||||| ||| ||| |||    
T  48156072 acaagagttttagtccaagaagaatgcactttgtattcgttcatcacccatatttcaactctttcattagcccaatcaacagcccataaactgagaaatt 48156171  T
Q  109 ctccaaataccgacaaa 125  Q
    ||||||||||| |||||    
T  48156172 ctccaaatacccacaaa 48156188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 5 - 67
Target Start/End: Complemental strand, 48864457 - 48864395
Alignment:
Q  5 aagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaac 67  Q
    |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48864457 aagaacaagaatcttagtccaagacgaatgcactttgtattctttcatcacccatatttcaac 48864395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 7801063 - 7800998
Alignment:
Q  1 cagaaagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaa 66  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||    
T  7801063 cagaaagaacaagagttttattccaagacgaatgcactttgtaatctttcaacacccatatttcaa 7800998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 11 - 68
Target Start/End: Original strand, 48147358 - 48147415
Alignment:
Q  11 aagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaact 68  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48147358 aagagtcttagtccaagacgaatgcactttgtattctttcatcacccatatttcaact 48147415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 6 - 67
Target Start/End: Original strand, 49038518 - 49038579
Alignment:
Q  6 agaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaac 67  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  49038518 agaacaagagtcttagtccaagacgaatgaactttgtattctttcatcacccatatttcaac 49038579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 48870986 - 48870859
Alignment:
Q  1 cagaaagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatcatcagcattatccttagcccatacact 100  Q
    |||||||||||||||| || ||||||||||| | |||||||||||| ||||||||||| ||||||| ||||| ||||  || |||| ||||  ||| |||    
T  48870986 cagaaagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaattgtattatcattataatccatagcatatagact 48870887  T
Q  101 aagatattctccaaataccgacaaacca 128  Q
     ||| |||| ||||||||| ||||||||    
T  48870886 gagaaattccccaaatacccacaaacca 48870859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 48876290 - 48876163
Alignment:
Q  1 cagaaagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatcatcagcattatccttagcccatacact 100  Q
    |||||||||||||||| || ||||||||||| | |||||||||||| ||||||||||| ||||||| ||||| ||||  || |||| ||||  ||| |||    
T  48876290 cagaaagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaattgtattatcattataatccatagcatatagact 48876191  T
Q  101 aagatattctccaaataccgacaaacca 128  Q
     ||| |||| ||||||||| ||||||||    
T  48876190 gagaaattccccaaatacccacaaacca 48876163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 48886672 - 48886545
Alignment:
Q  1 cagaaagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatcatcagcattatccttagcccatacact 100  Q
    |||||||||||||||| || ||||||||||| | |||||||||||| ||||||||||| ||||||| ||||| ||||  || |||| ||||  ||| |||    
T  48886672 cagaaagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaattgtattatcattataatccatagcatatagact 48886573  T
Q  101 aagatattctccaaataccgacaaacca 128  Q
     ||| |||| ||||||||| ||||||||    
T  48886572 gagaaattccccaaatacccacaaacca 48886545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 50666734 - 50666667
Alignment:
Q  8 aacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatcat 75  Q
    ||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||| ||||||||    
T  50666734 aacaagagttttagtccaagatgaatgcactttgtattcttacatcacccataattcaattgtatcat 50666667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 8 - 128
Target Start/End: Original strand, 37826632 - 37826752
Alignment:
Q  8 aacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatcatcagcattatccttagcccatacactaagatat 107  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||||||| || || || ||||| || |  | |  || | ||||||| ||||||| ||    
T  37826632 aacaagagtcttagtccaagacgaatgcagtttgtattctttcatcacccgtaatttaagtgtatgattataactgcccatggcccatagactaagaaat 37826731  T
Q  108 tctccaaataccgacaaacca 128  Q
    |||||||||||| ||||||||    
T  37826732 tctccaaatacccacaaacca 37826752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 45384531 - 45384595
Alignment:
Q  5 aagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactg 69  Q
    ||||||| |||| || |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  45384531 aagaacacgagtctttgtccaagacgaatgcactttatattctttcatcacccatatttcaactg 45384595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 48903366 - 48903316
Alignment:
Q  16 ttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaa 66  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  48903366 ttttagtccaagacaaatgcactttgtattctttcatcacccatatttcaa 48903316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 2 - 76
Target Start/End: Original strand, 49048191 - 49048265
Alignment:
Q  2 agaaagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatcatc 76  Q
    ||||| ||||| ||| |||||||| |||||||||||||| || |||||||||||||||||||||||| |||||||    
T  49048191 agaaaaaacaaaagtcttagtccatgacgaatgcactttatactctttcatcacccatatttcaactatatcatc 49048265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 7823395 - 7823332
Alignment:
Q  1 cagaaagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttc 64  Q
    |||||||||||||||||||| |||||||| ||||||||||||| ||||| | ||||||||||||    
T  7823395 cagaaagaacaagagttttattccaagacaaatgcactttgtaatctttaaacacccatatttc 7823332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 48861697 - 48861639
Alignment:
Q  18 ttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatcatc 76  Q
    |||||||||||| ||||||||||||||||||| || ||||||||||||| |||||||||    
T  48861697 ttagtccaagacaaatgcactttgtattcttttattacccatatttcaaatgtatcatc 48861639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 36 - 217
Target Start/End: Complemental strand, 48899131 - 48898953
Alignment:
Q  36 actttgtattctttcatcacccatatttcaactgtatcatcagcattatccttagcccatacactaagatattctccaaataccgacaaaccagaatgta 135  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||| ||    |||||||| ||| | | | |||||||| ||| |||||||| ||  |     
T  48899131 actttatattctttcatcacccatatttcaactgtatcattagcataatttgcagcccatatactgaaaaaatctccaaagacccacaaaccacaa--tc 48899034  T
Q  136 ctaatgctctatggtcaacatcatttggaagaggcatctcaaacaatttcctttccattaaatcaaaggcaacaatgccatt 217  Q
    || | |   |||| || | ||||| |||| ||| |||||| |||| |||||||||| |||||||||||||||||||| ||||    
T  48899033 ctga-ggaatatgttccaaatcatctggaggagacatctctaacagtttcctttccgttaaatcaaaggcaacaatgacatt 48898953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 48863690 - 48863625
Alignment:
Q  2 agaaagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaac 67  Q
    |||||| |||||||||||| ||||||| |||||||||  |||||||| |||||||||||| |||||    
T  48863690 agaaagcacaagagttttaatccaagatgaatgcactccgtattcttccatcacccatatgtcaac 48863625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 47208302 - 47208238
Alignment:
Q  2 agaaagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaa 66  Q
    |||||||| ||||  |||||||||||| || || |||||||||||||||||||||| ||||||||    
T  47208302 agaaagaataagaactttagtccaagatgattgtactttgtattctttcatcacccttatttcaa 47208238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 48735058 - 48735098
Alignment:
Q  13 gagttttagtccaagacgaatgcactttgtattctttcatc 53  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  48735058 gagttttagtccaagacgaattcactttgtattctttcatc 48735098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 50672907 - 50672860
Alignment:
Q  18 ttagtccaagacgaatgcactttgtattctttcatcacccatatttca 65  Q
    |||||||| |||||||||| |||||||| |||||||||||||||||||    
T  50672907 ttagtccacgacgaatgcaatttgtattgtttcatcacccatatttca 50672860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 218
Target Start/End: Complemental strand, 7771673 - 7771610
Alignment:
Q  155 atcatttggaagaggcatctcaaacaatttcctttccattaaatcaaaggcaacaatgccattc 218  Q
    |||| |||||| |||||||||||||| |||| | |||||||||||||| | ||||||| |||||    
T  7771673 atcacttggaacaggcatctcaaacattttcttctccattaaatcaaacgtaacaatgacattc 7771610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 218
Target Start/End: Complemental strand, 7790358 - 7790295
Alignment:
Q  155 atcatttggaagaggcatctcaaacaatttcctttccattaaatcaaaggcaacaatgccattc 218  Q
    |||| |||||| |||||||||||||| |||| | |||||||||||||| | ||||||| |||||    
T  7790358 atcacttggaacaggcatctcaaacattttcttctccattaaatcaaacgtaacaatgacattc 7790295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 56
Target Start/End: Complemental strand, 48734209 - 48734174
Alignment:
Q  21 gtccaagacgaatgcactttgtattctttcatcacc 56  Q
    |||||| |||||||||||||||||||||||||||||    
T  48734209 gtccaatacgaatgcactttgtattctttcatcacc 48734174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 212
Target Start/End: Complemental strand, 50669345 - 50669300
Alignment:
Q  167 aggcatctcaaacaatttcctttccattaaatcaaaggcaacaatg 212  Q
    |||||| || |||| |||||||||||| ||||||||||||||||||    
T  50669345 aggcatgtctaacagtttcctttccatcaaatcaaaggcaacaatg 50669300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 37826798 - 37826838
Alignment:
Q  171 atctcaaacaatttcctttccattaaatcaaaggcaacaat 211  Q
    ||||| |||| ||||||||||||||||| ||||||||||||    
T  37826798 atctctaacagtttcctttccattaaattaaaggcaacaat 37826838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 8 - 119
Target Start/End: Complemental strand, 9120182 - 9120071
Alignment:
Q  8 aacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatcatcagcattatccttagcccatacactaagatat 107  Q
    ||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||  |||| ||||||||| ||| ||| ||    
T  9120182 aacaagagttttcttccaagaggaatgcactttgtattctttcatcacccatatttcaactgtatcattagcaaaatccatagcccatatactgagaaat 9120083  T
Q  108 tctccaaatacc 119  Q
    ||||||||||||    
T  9120082 tctccaaatacc 9120071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 23 - 119
Target Start/End: Complemental strand, 179462 - 179366
Alignment:
Q  23 ccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatcatcagcattatccttagcccatacactaagatattctccaaatacc 119  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||| |||| ||||||||| ||| ||| ||| ||||||||||    
T  179462 ccaagatgaatgcactttgtattctttcatcacccatatttcaactgtatcattatcataatccatagcccatatactgagaaattgtccaaatacc 179366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 5 - 67
Target Start/End: Original strand, 42561972 - 42562034
Alignment:
Q  5 aagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaac 67  Q
    |||||||||| | ||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  42561972 aagaacaagaatcttagtccaagatgaatgcactttgtattctttcatcacccatatatcaac 42562034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 2 - 71
Target Start/End: Complemental strand, 29688554 - 29688485
Alignment:
Q  2 agaaagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactgta 71  Q
    ||||||||| ||||| || ||||||||||| ||||| ||||||| |||||||||||||||||||||||||    
T  29688554 agaaagaacgagagtctttgtccaagacgattgcacattgtattttttcatcacccatatttcaactgta 29688485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 29712083 - 29712146
Alignment:
Q  8 aacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactgta 71  Q
    ||||||||| ||||||||||| ||   ||| ||||||| || ||||||||||||||||||||||    
T  29712083 aacaagagtcttagtccaagaagatgtcacattgtatttttccatcacccatatttcaactgta 29712146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 29696654 - 29696600
Alignment:
Q  9 acaagagttttagtccaagacgaatgcactttgtattctttcatcacccatattt 63  Q
    |||||||| ||||||||||| || ||||| ||||||| || ||||||||||||||    
T  29696654 acaagagtcttagtccaagaggattgcacattgtatttttccatcacccatattt 29696600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 8e-22; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 27 - 203
Target Start/End: Original strand, 4962180 - 4962357
Alignment:
Q  27 gacgaatgcactttgtattctttcatcacccatatttcaactgtatcatcagcattatccttagcccatacactaagatattctccaaataccgacaaac 126  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||  ||    || |||| |  |||||| ||| ||| |||||||||||||| ||||||    
T  4962180 gacgaatgcagtttgtattctttcatcacccatatttcaactctacaattgcgataatccatgccccatagactgagaaattctccaaatacccacaaac 4962279  T
Q  127 cagaatgtactaat-gctctatggtcaacatcatttggaagaggcatctcaaacaatttcctttccattaaatcaaag 203  Q
    || ||  |||  |  | |  || ||||| |||||| |||||||||||||| |||||||||||||||||||||||||||    
T  4962280 cataacttacagacaggttcatagtcaaaatcattgggaagaggcatctctaacaatttcctttccattaaatcaaag 4962357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 5 - 211
Target Start/End: Complemental strand, 15349305 - 15349102
Alignment:
Q  5 aagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatcatcagcattatccttagcccatacactaaga 104  Q
    |||||||||| | || |||||||| || | ||||||||||||||||||||||||||||||||   |||||| || || |||| ||| ||| | ||||| |    
T  15349305 aagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaaagctatcattaggataatccgtagaccaaagactaaaa 15349206  T
Q  105 tattctccaaataccgacaaaccagaatgtactaatgctctatggtcaacatcatttggaagaggcatctcaaacaatttcctttccattaaatcaaagg 204  Q
     |||| ||||| ||| |||||||| |||  || |  ||   ||| |||| ||||| |||| ||||||||||||||| |||||||||  |||||||||| |    
T  15349205 aattcgccaaagacccacaaaccacaat-cacca--gcatcatgttcaaaatcatctggaggaggcatctcaaacagtttcctttcgtttaaatcaaatg 15349109  T
Q  205 caacaat 211  Q
    |||||||    
T  15349108 caacaat 15349102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 211
Target Start/End: Complemental strand, 12195742 - 12195543
Alignment:
Q  9 acaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatcatcagcattatccttagcccatacactaagatatt 108  Q
    |||||||| ||||||||||| || ||   |||||||||||||||| ||||||||||||||||   || | ||  || | ||  ||||| ||| ||| |||    
T  12195742 acaagagtcttagtccaagatgattgttgtttgtattctttcatctcccatatttcaactgtccgattatcaaaattcatattccatagactgagaaatt 12195643  T
Q  109 ctccaaataccgacaaaccagaatgtactaatgctctatggtcaacatcatttggaagaggcatctcaaacaatttcctttccattaaatcaaaggcaac 208  Q
     |||||||||| |||||||| ||||  ||   |  | ||||||   ||||| ||||||||| ||||| ||||||||||||||||||||||||||| ||||    
T  12195642 ttccaaatacccacaaaccataatgctct---ggaccatggtcgtaatcatctggaagaggtatctctaacaatttcctttccattaaatcaaagacaac 12195546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 211
Target Start/End: Complemental strand, 12440170 - 12439971
Alignment:
Q  9 acaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatcatcagcattatccttagcccatacactaagatatt 108  Q
    |||||||| ||||||||||| || ||   |||||||||||||||| ||||||||||||||||   || | ||  || | ||  ||||| ||| ||| |||    
T  12440170 acaagagtcttagtccaagatgattgttgtttgtattctttcatctcccatatttcaactgtccgattatcaaaattcatattccatagactgagaaatt 12440071  T
Q  109 ctccaaataccgacaaaccagaatgtactaatgctctatggtcaacatcatttggaagaggcatctcaaacaatttcctttccattaaatcaaaggcaac 208  Q
     |||||||||| |||||||| ||||  ||   |  | ||||||   ||||| ||||||||| ||||| ||||||||||||||||||||||||||| ||||    
T  12440070 ttccaaatacccacaaaccataatgctct---ggaccatggtcgtaatcatctggaagaggtatctctaacaatttcctttccattaaatcaaagacaac 12439974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 4031578 - 4031628
Alignment:
Q  18 ttagtccaagacgaatgcactttgtattctttcatcacccatatttcaact 68  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  4031578 ttagtccaagacgaatgcattttgtattctttcataacccatatttcaact 4031628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 211
Target Start/End: Complemental strand, 12200760 - 12200561
Alignment:
Q  9 acaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatcatcagcattatccttagcccatacactaagatatt 108  Q
    |||||||| || |||||||||||| ||| |||||||  ||||||| ||||||||||||  || | || | ||  || | ||  ||||| ||||||| |||    
T  12200760 acaagagtcttggtccaagacgaacgcagtttgtatattttcatcgcccatatttcaagcgtctgattatcaaaattcatattccatagactaagaaatt 12200661  T
Q  109 ctccaaataccgacaaaccagaatgtactaatgctctatggtcaacatcatttggaagaggcatctcaaacaatttcctttccattaaatcaaaggcaac 208  Q
    ||||||||||| |||||||| |||  | |||  |   |||||  | ||||| ||||||| | ||||| | ||||||||||||||||||||||||||||||    
T  12200660 ctccaaatacccacaaaccataataca-taagacc--atggttgaaatcatctggaagaagtatctctaccaatttcctttccattaaatcaaaggcaac 12200564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 211
Target Start/End: Complemental strand, 12445188 - 12444989
Alignment:
Q  9 acaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatcatcagcattatccttagcccatacactaagatatt 108  Q
    |||||||| || |||||||||||| ||| |||||||  ||||||| ||||||||||||  || | || | ||  || | ||  ||||| ||||||| |||    
T  12445188 acaagagtcttggtccaagacgaacgcagtttgtatattttcatcgcccatatttcaagcgtctgattatcaaaattcatattccatagactaagaaatt 12445089  T
Q  109 ctccaaataccgacaaaccagaatgtactaatgctctatggtcaacatcatttggaagaggcatctcaaacaatttcctttccattaaatcaaaggcaac 208  Q
    ||||||||||| |||||||| |||  | |||  |   |||||  | ||||| ||||||| | ||||| | ||||||||||||||||||||||||||||||    
T  12445088 ctccaaatacccacaaaccataataca-taagacc--atggttgaaatcatctggaagaagtatctctaccaatttcctttccattaaatcaaaggcaac 12444992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 48884246 - 48884174
Alignment:
Q  5 aagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatcatca 77  Q
    |||||||||||| ||||||||||||  ||||||||||||||||||||||||| ||||||||||| ||||||||    
T  48884246 aagaacaagagtcttagtccaagacatatgcactttgtattctttcatcacctatatttcaactttatcatca 48884174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 71
Target Start/End: Original strand, 30130916 - 30130967
Alignment:
Q  20 agtccaagacgaatgcactttgtattctttcatcacccatatttcaactgta 71  Q
    ||||||||| ||||||||| ||||||||| |||||||||||| | |||||||    
T  30130916 agtccaagatgaatgcactgtgtattcttgcatcacccatatcttaactgta 30130967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 71
Target Start/End: Complemental strand, 30165914 - 30165853
Alignment:
Q  10 caagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactgta 71  Q
    |||||||  |||||||||| |||||||||  |||||||| |||||||||||| | |||||||    
T  30165914 caagagtcgtagtccaagatgaatgcactgcgtattcttgcatcacccatatcttaactgta 30165853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 9 - 211
Target Start/End: Original strand, 11005571 - 11005764
Alignment:
Q  9 acaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatcatcagcattatccttagcccatacactaagatatt 108  Q
    |||||||  ||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||        || ||||||||| ||||||| |||    
T  11005571 acaagagccttagtccaagacgaatgcactttgtattctttcataacccatatttcaattgtttcatc------ccccatagcccatagactaagaaatt 11005664  T
Q  109 ctccaaataccgacaaaccagaatgtactaatgctctatggtcaacatcatttggaagaggcatctcaaacaatttcctttccattaaatcaaaggcaac 208  Q
    ||||||||| | ||||| || |||   |||  | |  ||| |||| | ||| ||||| ||||||||| || | ||||||||||| |||||||||| ||||    
T  11005665 ctccaaatatccacaaatcacaat---ctataggttcatgatcaaaaccatatggaaaaggcatctctaaaagtttcctttccactaaatcaaagccaac 11005761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 11015134 - 11015195
Alignment:
Q  9 acaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactgt 70  Q
    ||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||||||    
T  11015134 acaagagttttaacccaagacgaatgcactttgtattctttcataacccatatttcaactgt 11015195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 11024146 - 11024203
Alignment:
Q  9 acaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaa 66  Q
    |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  11024146 acaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaa 11024203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 5 - 128
Target Start/End: Original strand, 47451539 - 47451662
Alignment:
Q  5 aagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatcatcagcattatccttagcccatacactaaga 104  Q
    |||||||||||| ||   |||||||||||  ||||||||||||||||||||||||||||||||| |||||| |  |  ||||  | ||| || |||||||    
T  47451539 aagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatcattatgacaatccagaacccttagactaaga 47451638  T
Q  105 tattctccaaataccgacaaacca 128  Q
     |||||||||||||| ||||||||    
T  47451639 aattctccaaatacccacaaacca 47451662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 11 - 74
Target Start/End: Complemental strand, 21016237 - 21016174
Alignment:
Q  11 aagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatca 74  Q
    |||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||    
T  21016237 aagagtcttagtccaagacgaatgtactttgtattctttcataacccatatttcaactatatca 21016174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 21979267 - 21979325
Alignment:
Q  5 aagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatattt 63  Q
    |||||||||  | ||| ||||||| ||| ||||||||||||||||||||||||||||||    
T  21979267 aagaacaagtttcttattccaagaggaacgcactttgtattctttcatcacccatattt 21979325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 161 - 211
Target Start/End: Original strand, 21979423 - 21979473
Alignment:
Q  161 tggaagaggcatctcaaacaatttcctttccattaaatcaaaggcaacaat 211  Q
    ||||||||| |||||||| | ||||||||| ||||||||||||||||||||    
T  21979423 tggaagagggatctcaaaaagtttcctttctattaaatcaaaggcaacaat 21979473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 14197337 - 14197377
Alignment:
Q  20 agtccaagacgaatgcactttgtattctttcatcacccata 60  Q
    ||||||||| ||||||| |||||||||||||||||||||||    
T  14197337 agtccaagatgaatgcattttgtattctttcatcacccata 14197377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 6 - 61
Target Start/End: Complemental strand, 24367586 - 24367531
Alignment:
Q  6 agaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatat 61  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  24367586 agaacaagagttttagtccaagacgaatgcactttgtattcttccattacccatat 24367531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 6 - 73
Target Start/End: Complemental strand, 24416199 - 24416132
Alignment:
Q  6 agaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatc 73  Q
    ||||||||||||||||||||||| || ||| ||||||||||||||||||||||||| |||||| ||||    
T  24416199 agaacaagagttttagtccaagatgactgccctttgtattctttcatcacccatatatcaactctatc 24416132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 24310635 - 24310570
Alignment:
Q  8 aacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatc 73  Q
    ||||||||||||| ||||||| || ||||||||||||||||||||||||||||| |||||| ||||    
T  24310635 aacaagagttttactccaagaagactgcactttgtattctttcatcacccatatatcaactttatc 24310570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 5 - 58
Target Start/End: Complemental strand, 24323192 - 24323139
Alignment:
Q  5 aagaacaagagttttagtccaagacgaatgcactttgtattctttcatcaccca 58  Q
    ||||||||||||||||||| |||| || ||||||||||||||||||||||||||    
T  24323192 aagaacaagagttttagtcgaagatgactgcactttgtattctttcatcaccca 24323139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 24340833 - 24340765
Alignment:
Q  5 aagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatc 73  Q
    |||||||||||||||||||||||| || |||||||| ||||||||||| ||||| || ||||| |||||    
T  24340833 aagaacaagagttttagtccaagatgactgcactttatattctttcattacccagatatcaaccgtatc 24340765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 24353198 - 24353130
Alignment:
Q  5 aagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatc 73  Q
    |||||||||||||||||||||||| || |||||||| ||||||||||| ||||| || ||||| |||||    
T  24353198 aagaacaagagttttagtccaagatgactgcactttatattctttcattacccagatatcaaccgtatc 24353130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 24369863 - 24369800
Alignment:
Q  5 aagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaact 68  Q
    |||||||||||||||||||||||| |||||||||   || | || |||||||||||| ||||||    
T  24369863 aagaacaagagttttagtccaagatgaatgcactccatactattccatcacccatatatcaact 24369800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University