View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1244_low_13 (Length: 457)
Name: NF1244_low_13
Description: NF1244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1244_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 1 - 446
Target Start/End: Original strand, 36021357 - 36021802
Alignment:
| Q |
1 |
ttaattgcattatagcatccctcatgtgcctgcatgtgctctattgtgtttttgaagttcttagccttttcattccattatttgatttgtttatggagta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |
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| T |
36021357 |
ttaattgcattatagcatccctcatgtgcctgcatgtgctctattgtgtttttgaaattcttagcctttgcattccattatttgatttgtttatggagta |
36021456 |
T |
|
| Q |
101 |
tctgcatgtgttttgagtttaatctgtgttgtatatgcagaatgggaagcactgaaaaaactaactatggagaatacacctatgaaaatctcgagagaga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
36021457 |
tctgcatgtgttttgagtttaatctgtgttgtatatgcagaatgggaagcactgaaaaaactaactatggagaatacacctatgagaatctcgagagaga |
36021556 |
T |
|
| Q |
201 |
gccttactggccatcagaaaagcttaaaatttccatcactggtgctgggggttttatcgcgtcacacttagcacggcgtctcaagaaggagggacattac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
36021557 |
gccttactggccatcagaaaagcttaaaatttccatcactggtgctgggggttttatcgcgtcacacttagcgcggcgtctcaagaaggagggacattac |
36021656 |
T |
|
| Q |
301 |
attattgcttctgactggaagaaaaatgagcacatgactgaggacatgttctgtgatgaattccatcttgttgatctcagggtcatggataactgcttaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36021657 |
attattgcttctgactggaagaaaaatgagcacatgactgaggacatgttctgtgatgaattccatcttgttgatctcagggtcatggataactgcttaa |
36021756 |
T |
|
| Q |
401 |
ccgttacgaaaggggttgaccatgttttcaatcttgccgctgatat |
446 |
Q |
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| T |
36021757 |
ccgttactaaaggggttgaccatgttttcaatcttgccgctgatat |
36021802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 193 - 446
Target Start/End: Complemental strand, 47518449 - 47518196
Alignment:
| Q |
193 |
gagagagagccttactggccatcagaaaagcttaaaatttccatcactggtgctgggggttttatcgcgtcacacttagcacggcgtctcaagaaggagg |
292 |
Q |
| |
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|||||||| || || |||||| |||||||||| | ||||||||| || |||||||| || ||||| || || ||| | || || ||||| |||| |||| |
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| T |
47518449 |
gagagagaaccatattggccaacagaaaagctaagaatttccattaccggtgctggtgggtttattgcctcccacattgctcgccgtcttaagaccgagg |
47518350 |
T |
|
| Q |
293 |
gacattacattattgcttctgactggaagaaaaatgagcacatgactgaggacatgttctgtgatgaattccatcttgttgatctcagggtcatggataa |
392 |
Q |
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| |||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||| |||||||| |
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| T |
47518349 |
gccattacattattgcctctgattggaagaagaatgagcacatgactgaggacatgttctgtcatgagttccatcttgttgatcttagggttatggataa |
47518250 |
T |
|
| Q |
393 |
ctgcttaaccgttacgaaaggggttgaccatgttttcaatcttgccgctgatat |
446 |
Q |
| |
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||| | | ||||| || | || || ||||||||||||||||| |||||||| |
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| T |
47518249 |
ttgcctcaaagttactaaggatgtggatcatgttttcaatcttgctgctgatat |
47518196 |
T |
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