View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1244_low_19 (Length: 399)
Name: NF1244_low_19
Description: NF1244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1244_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 27 - 389
Target Start/End: Original strand, 40311208 - 40311569
Alignment:
| Q |
27 |
acctttatattgatagcctgaaattccagggtcctcattactcatgattgaaaaatatacagttagcttaacccaacc-accttttgcaataaactctta |
125 |
Q |
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| T |
40311208 |
acctttatattgatagcctgaaattccagggtcctcattactcatgattgaaaaatatacagttagcttaacccaacccaccttttgcaataaactctta |
40311307 |
T |
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| Q |
126 |
aaaaattctcaatgcccatcccgcatttaatcattcgagcttgagaatttaaaccctatagaaatacagacatgatcaacaaaatataaattgagataaa |
225 |
Q |
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| T |
40311308 |
aaaaattctcaatgcccatcccgcatttaatcattcgagcttgagaatttaaaccctatagaaatacagacatgatcaacaaaa-ataaattgagataaa |
40311406 |
T |
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| Q |
226 |
tgcagaacctatttctttctctattannnnnnnnaaaattaaattgtgaagaaacaagggtgcaataaaataaaattatgaacaacttatgaagaacaaa |
325 |
Q |
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| T |
40311407 |
tgcagaacctatttctttctctatta-tttttttaaaattaaattgtgaagaagcaagggtgcaataaaataaaactatgaacaacttatgaagaacaaa |
40311505 |
T |
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| Q |
326 |
ggaggaatggtgtgaaacctaaaataaaagggagtaattagaaaaattaaattacctgtctgtg |
389 |
Q |
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| T |
40311506 |
ggaggaatgatgtgaaacctaaaataaaagggagtaattagaaaaattaaattacctgtctgtg |
40311569 |
T |
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