View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1244_low_20 (Length: 398)
Name: NF1244_low_20
Description: NF1244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1244_low_20 |
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| [»] scaffold0006 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 13 - 330
Target Start/End: Complemental strand, 13382854 - 13382537
Alignment:
| Q |
13 |
aatattttccaaagtatcaatgggacatcattttatcaatacaccaagacaaacaaagaattgaatgatacttgtaacaaagcaatggctcattctggtc |
112 |
Q |
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| T |
13382854 |
aatattttccaaagtatcaatgggacatcattttatcaatacaccaagacaaacaaagaattgaatgatacttgtaacaaagcaatggctcattctggtc |
13382755 |
T |
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| Q |
113 |
cattggaaattaaaaggatccttcaattttataaaggatttgaaggagtctcaacgttggttgatgttggaggtggagtaggaaagaccctaaaactcat |
212 |
Q |
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| T |
13382754 |
cattggaaattaaaaggatccttcaattttataaaggatttgaaggagtctcaacgttggttgatgttggaggtggagtaggaaagaccctaaaactcat |
13382655 |
T |
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| Q |
213 |
tatctctcaatatccttcaattaagggaattaattttgatgtgccacaagttgttcaaaatgcaccttctcatccaggtaaaatatatcaatctcataaa |
312 |
Q |
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| T |
13382654 |
tatctctcaatatccttcaattaagggaattaattttgatatgccacaagttgttcaaaatgcaccttctcatccaggtaaaatatatcaatctcttcaa |
13382555 |
T |
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| Q |
313 |
ataaatttcattccaata |
330 |
Q |
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| T |
13382554 |
ataaatttcattccaata |
13382537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 17 - 305
Target Start/End: Complemental strand, 13394219 - 13393931
Alignment:
| Q |
17 |
ttttccaaagtatcaatgggacatcattttatcaatacaccaagacaaacaaagaattgaatgatacttgtaacaaagcaatggctcattctggtccatt |
116 |
Q |
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| T |
13394219 |
tttttcaaagtatcaatgggacatcattttatcaatacaccaagacaaacaaagaattgaatgatgtttttaacaaagcaatgggacaatctggaccatt |
13394120 |
T |
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| Q |
117 |
ggaaattaaaaggatccttcaattttataaaggatttgaaggagtctcaacgttggttgatgttggaggtggagtaggaaagaccctaaaactcattatc |
216 |
Q |
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| T |
13394119 |
agaaattaaaaggatcctcaaattatataaaggttttgaaggaatctcaacattggttgatgttggaggtggagtaggagaaaccctaaaactcattctc |
13394020 |
T |
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| Q |
217 |
tctcaatatccttcaattaagggaattaattttgatgtgccacaagttgttcaaaatgcaccttctcatccaggtaaaatatatcaatc |
305 |
Q |
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| T |
13394019 |
tctcaatatccttcaattaagggagttaattttgacttaccacaagctgttcaagatgcacctactcttccaggtaaaatttatcaatc |
13393931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 87 - 300
Target Start/End: Complemental strand, 13407107 - 13406894
Alignment:
| Q |
87 |
taacaaagcaatggctcattctggtccattggaaattaaaaggatccttcaattttataaaggatttgaaggagtctcaacgttggttgatgttggaggt |
186 |
Q |
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| T |
13407107 |
taacaaagcaatggctcaatctggtccattagaaatgaaaaggattcttacactatataaaggatttgaggaagtctcaacactggttgatgtaggtggt |
13407008 |
T |
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| Q |
187 |
ggagtaggaaagaccctaaaactcattatctctcaatatccttcaattaagggaattaattttgatgtgccacaagttgttcaaaatgcaccttctcatc |
286 |
Q |
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| T |
13407007 |
ggagtagggaatgctttgaaacagattatatctgaatatccttcaataaaaggcattaattttgatttaccccaagtggttcaagatgcaccaactcatc |
13406908 |
T |
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| Q |
287 |
caggtaaaatatat |
300 |
Q |
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| T |
13406907 |
caggtaatatatat |
13406894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 192 - 306
Target Start/End: Complemental strand, 13391062 - 13390949
Alignment:
| Q |
192 |
aggaaagaccctaaaactcattatctctcaatatccttcaattaagggaattaattttgatgtgccacaagttgttcaaaatgcaccttctcatccaggt |
291 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||| || ||| | |||||||| | ||||||| ||||||| |||||||| ||||||||||| |
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| T |
13391062 |
aggagagacgctaaaactcattatctctcaatatccttcaatcaacggagtaaattttgactt-ccacaagctgttcaagatgcacctactcatccaggt |
13390964 |
T |
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| Q |
292 |
aaaatatatcaatct |
306 |
Q |
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| T |
13390963 |
aaaatatatcaatct |
13390949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 142 - 300
Target Start/End: Original strand, 19174632 - 19174790
Alignment:
| Q |
142 |
tataaaggatttgaaggagtctcaacgttggttgatgttggaggtggagtaggaaagaccctaaaactcattatctctcaatatccttcaattaagggaa |
241 |
Q |
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|||||||||||||| ||||||||||| |||||||||| || ||||||||||| || | | |||| ||||| ||| ||||||||||||| || || | |
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| T |
19174632 |
tataaaggatttgagggagtctcaacactggttgatgtaggtggtggagtagggaatgctttgaaacagattatatctgaatatccttcaataaaaggca |
19174731 |
T |
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| Q |
242 |
ttaattttgatgtgccacaagttgttcaaaatgcaccttctcatccaggtaaaatatat |
300 |
Q |
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| T |
19174732 |
ttaattttgatttacctcaagtggttcaagatgcaccaactcatccaggtaatatatat |
19174790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 87 - 129
Target Start/End: Complemental strand, 13624981 - 13624939
Alignment:
| Q |
87 |
taacaaagcaatggctcattctggtccattggaaattaaaagg |
129 |
Q |
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| T |
13624981 |
taacaaagcaatggcccattctgatccattggaaatgaaaagg |
13624939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 324 - 392
Target Start/End: Complemental strand, 8950693 - 8950625
Alignment:
| Q |
324 |
tccaataatatttaagccatataagtttttgtttttaaaggccatatacatattgattatattaaaaag |
392 |
Q |
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| T |
8950693 |
tccaataatatttaagccatataaatttttgtttttaaaggccatataaatattgattatattaaaaag |
8950625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 131
Target Start/End: Complemental strand, 123284 - 123240
Alignment:
| Q |
87 |
taacaaagcaatggctcattctggtccattggaaattaaaaggat |
131 |
Q |
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|||| |||||||||| |||||| ||||||||||||| |||||||| |
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| T |
123284 |
taacgaagcaatggcccattctagtccattggaaatgaaaaggat |
123240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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