View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1244_low_21 (Length: 394)
Name: NF1244_low_21
Description: NF1244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1244_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 164; Significance: 1e-87; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 98 - 265
Target Start/End: Original strand, 45108662 - 45108829
Alignment:
| Q |
98 |
agacacacaataatattcctaagaatcatttttcttgtgatgtttcttgggtggctatctgtttggatcttgttgcctactaagatttacaaaaagatct |
197 |
Q |
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| T |
45108662 |
agacacacaataatattcctaagaatcatttttcttgtgatgtttcttgggtggctatctgtttggatcttgttgcctactaagatttacaaaaagatct |
45108761 |
T |
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| Q |
198 |
gggttcccatgctacaaaacaagttcaattctacatacttcagagggcaaggtaattacgtgtttgtg |
265 |
Q |
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| T |
45108762 |
gggctcccatgctacaaaacaagttcaattctacatacttcagagggcaaggtaattacgtgtttgtg |
45108829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 112 - 250
Target Start/End: Original strand, 45125694 - 45125832
Alignment:
| Q |
112 |
attcctaagaatcatttttcttgtgatgtttcttgggtggctatctgtttggatcttgttgcctactaagatttacaaaaagatctgggttcccatgcta |
211 |
Q |
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| T |
45125694 |
attcctaaggatcatttttctttttatgtttcttggatggctaacagtttggatcttgttgcccacaaaggtctacaaaaacacatggactcccaagcta |
45125793 |
T |
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| Q |
212 |
caaaacaagttcaattctacatacttcagagggcaaggt |
250 |
Q |
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| T |
45125794 |
gaaatcaagctcaattctacatactttagagagcaaggt |
45125832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 331 - 384
Target Start/End: Original strand, 45108893 - 45108946
Alignment:
| Q |
331 |
cagtagttcttaactttattagggataaatctcctgtttttcacattccctatg |
384 |
Q |
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| T |
45108893 |
cagtagttcttaactttattagggataaatctcctgtttttcacattccctatg |
45108946 |
T |
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