View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1244_low_23 (Length: 386)
Name: NF1244_low_23
Description: NF1244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1244_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 31 - 360
Target Start/End: Complemental strand, 28526861 - 28526532
Alignment:
| Q |
31 |
tagcaaatatttatggacaacaattaattttctaacttttgagaaataaattgacacaattttaaattcatcaatgatcgaaggtaatttatgcaaaaga |
130 |
Q |
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|||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28526861 |
tagcaaatatttatggacaacaattaattttcaaccttttgaaaaataaattgacacaattttaaattcatcaatgatcgaaggtaatttatgcaaaaga |
28526762 |
T |
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| Q |
131 |
tttaannnnnnnnattaggatagtataaatcaaatgtaattaactatcatctctttttaatatttgtaatttataatttgatacattaaattgttcgaca |
230 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28526761 |
tttaattttttttattaggatagtataaatcaaatgtaattaactatcatctctttttaatatttgtaatttataatttgatacattaaattgttcgaca |
28526662 |
T |
|
| Q |
231 |
aatattctgattaaccaaaggaagaactctatgtagcttctccttcaaatttggtctgtctctgaatatttgccacaaaaagcaatatttgagatagaat |
330 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |
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| T |
28526661 |
aatattctgattaaccaaaggaagaactctatgtagcttctccttcaaatttggtctgtctctgaatatttgccccaaaaagcaaaatttgagatagaat |
28526562 |
T |
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| Q |
331 |
tgaagattatctaattcgtgactgtaagta |
360 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
28526561 |
tgaagattatctaattcgtgactgtaagta |
28526532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 93
Target Start/End: Complemental strand, 40999818 - 40999777
Alignment:
| Q |
52 |
aattaattttctaacttttgagaaataaattgacacaatttt |
93 |
Q |
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| T |
40999818 |
aattaattttcaacattttgagaaataaattgacacaatttt |
40999777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 92
Target Start/End: Original strand, 41728936 - 41728976
Alignment:
| Q |
52 |
aattaattttctaacttttgagaaataaattgacacaattt |
92 |
Q |
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|||| |||||| || |||||||||||||||||||||||||| |
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| T |
41728936 |
aatttattttcaaatttttgagaaataaattgacacaattt |
41728976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 93
Target Start/End: Original strand, 6035432 - 6035472
Alignment:
| Q |
53 |
attaattttctaacttttgagaaataaattgacacaatttt |
93 |
Q |
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||||||||| || ||||||||||||||||||||||||||| |
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| T |
6035432 |
attaatttttaaaattttgagaaataaattgacacaatttt |
6035472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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