View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1244_low_27 (Length: 359)
Name: NF1244_low_27
Description: NF1244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1244_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 96 - 317
Target Start/End: Complemental strand, 5744904 - 5744683
Alignment:
| Q |
96 |
acttgtgaccaaagctcatcaagctgtttttgtttcctcattcgcgaccggcgtgctgactctcggttcgataccattcttcgatgttttctttcgttga |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5744904 |
acttgtgaccaaagctcatcaagctgtttttgtttcctcattcgcgaccggcgtgctgactctcggttcgataccattcttcgatgttttctttcgttga |
5744805 |
T |
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| Q |
196 |
ttagacctaggttttgttcgtccgcttcgtcggaagttgagttgctgcttatgcatgacgatggaggactgaagtcttggagaatttgaatagggttttg |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
5744804 |
ttagacctaggttttgttcgtccgcttcgtcggaagttgagttgctgcttatgcatgaggatggaggactgaagtcttggagaatttgaatagggttttg |
5744705 |
T |
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| Q |
296 |
gttgaaaccatagaattggttg |
317 |
Q |
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|||||||||||||||||||||| |
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| T |
5744704 |
gttgaaaccatagaattggttg |
5744683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 96 - 253
Target Start/End: Complemental strand, 6066910 - 6066753
Alignment:
| Q |
96 |
acttgtgaccaaagctcatcaagctgtttttgtttcctcattcgcgaccggcgtgctgactctcggttcgataccattcttcgatgttttctttcgttga |
195 |
Q |
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||||||||||||||||||||||| ||||| || |||||||| || || || || ||||| || ||||| |||| ||| |||| ||||| || || |||| |
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| T |
6066910 |
acttgtgaccaaagctcatcaaggtgtttctgcttcctcatgcgtgaacgacgcgctgattcgcggtttgatatcatccttctgtgtttcctctcattga |
6066811 |
T |
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| Q |
196 |
ttagacctaggttttgttcgtccgcttcgtcggaagttgagttgctgcttatgcatga |
253 |
Q |
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| T |
6066810 |
tgagactaaggttttgttcatctgcttcatcagaagttgagttgctgcttatgcatga |
6066753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 314 - 349
Target Start/End: Original strand, 43629892 - 43629927
Alignment:
| Q |
314 |
gttgtagtagctgtactgtggtgtgtcttgtctgtg |
349 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
43629892 |
gttgtagtagctgtactgtggtgtgtcttgtctgtg |
43629927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 136
Target Start/End: Original strand, 4952064 - 4952109
Alignment:
| Q |
91 |
tcatcacttgtgaccaaagctcatcaagctgtttttgtttcctcat |
136 |
Q |
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||||||||||||||||||| ||||| | ||||||||||||||||| |
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| T |
4952064 |
tcatcacttgtgaccaaagttcatccaagtgtttttgtttcctcat |
4952109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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