View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1244_low_29 (Length: 318)
Name: NF1244_low_29
Description: NF1244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1244_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 84 - 222
Target Start/End: Original strand, 40834934 - 40835068
Alignment:
| Q |
84 |
gaatagtagcaaggtgaaccataaacactgcaaacccaattggaagtggtgccaaaacctatacacaacaaaaccaaacaataaaaatatacaacattaa |
183 |
Q |
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| T |
40834934 |
gaatagtagcaaggtgaaccataaacactgcaaacccaattggaagtggtgccaaaacctatacacaacaaaaccaaacaataaaaatacacaac----a |
40835029 |
T |
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| Q |
184 |
ttaaactttaaagtactattttcttttcttagtctaaaa |
222 |
Q |
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| T |
40835030 |
ttaaactttaaagtactattttcttttcttagtctaaaa |
40835068 |
T |
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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 140
Target Start/End: Original strand, 2649257 - 2649313
Alignment:
| Q |
84 |
gaatagtagcaaggtgaaccataaacactgcaaacccaattggaagtggtgccaaaa |
140 |
Q |
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| T |
2649257 |
gaattgtagccaagtgaaccaaaaacacagcaaacccaattggaagaggtgccaaaa |
2649313 |
T |
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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 86 - 145
Target Start/End: Original strand, 40206919 - 40206978
Alignment:
| Q |
86 |
atagtagcaaggtgaaccataaacactgcaaacccaattggaagtggtgccaaaacctat |
145 |
Q |
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| T |
40206919 |
atagtagccaagtgaaccatgaacacagcaaatccaatgggaagtggtgccaatacctat |
40206978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 143
Target Start/End: Complemental strand, 21794058 - 21794001
Alignment:
| Q |
86 |
atagtagcaaggtgaaccataaacactgcaaacccaattggaagtggtgccaaaacct |
143 |
Q |
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| T |
21794058 |
atagtagccaagtgaaccatgaaaacagcaaatccaatgggaagtggtgccaaaacct |
21794001 |
T |
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