View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1244_low_3 (Length: 670)

Name: NF1244_low_3
Description: NF1244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1244_low_3
NF1244_low_3
[»] chr5 (8 HSPs)
chr5 (85-611)||(12643597-12644124)
chr5 (22-415)||(35842084-35842485)
chr5 (145-415)||(12528667-12528938)
chr5 (437-611)||(12529243-12529417)
chr5 (438-611)||(35841605-35841778)
chr5 (603-641)||(12643532-12643570)
chr5 (604-641)||(12529447-12529484)
chr5 (604-641)||(35841538-35841575)
[»] chr2 (6 HSPs)
chr2 (22-415)||(42912650-42913051)
chr2 (145-415)||(42300957-42301228)
chr2 (437-611)||(42913356-42913530)
chr2 (437-611)||(42300478-42300652)
chr2 (604-641)||(42300411-42300448)
chr2 (604-641)||(42913560-42913597)
[»] chr1 (4 HSPs)
chr1 (22-415)||(29281791-29282192)
chr1 (437-611)||(29282497-29282671)
chr1 (604-641)||(29282701-29282738)
chr1 (604-641)||(49220696-49220733)
[»] chr4 (8 HSPs)
chr4 (34-415)||(27729763-27730151)
chr4 (22-415)||(45966371-45966772)
chr4 (34-415)||(24147094-24147482)
chr4 (437-611)||(27730456-27730630)
chr4 (437-611)||(45965892-45966066)
chr4 (433-549)||(24146694-24146810)
chr4 (604-641)||(27730660-27730697)
chr4 (604-641)||(45965825-45965862)
[»] chr6 (3 HSPs)
chr6 (34-415)||(29304104-29304492)
chr6 (437-611)||(29303625-29303799)
chr6 (604-641)||(29303558-29303595)
[»] chr8 (3 HSPs)
chr8 (227-413)||(11402663-11402849)
chr8 (431-550)||(11403131-11403250)
chr8 (191-378)||(11402481-11402665)


Alignment Details
Target: chr5 (Bit Score: 480; Significance: 0; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 85 - 611
Target Start/End: Complemental strand, 12644124 - 12643597
Alignment:
Q  85 atccatggtagatttta-tgtttcgttcaaagaagagaacagttctttttatcaacgcatatgattactacatctagtgtccaaataccaaatattttct 183  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  12644124 atccatggtagattttactatttcgttcaaagaagagaacagttctttttatcaacgcatatgattactacatccagtgtccaaataccaaatattttct 12644025  T
Q  184 tcttctaaaagtgtattgcttgctaaaaataaactatatggaatttcataagactcactagtttttgatatgaattttctggcatgttttctcgatgttt 283  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12644024 tcttctaaaagtgtattgcttgctaaaaataaactatatggaatttcataagactcactagtttttgatatgaattttctggcatgttttctcgatgttt 12643925  T
Q  284 gtatctgcaatcagctgttttgtgcccaaactttccatagtggaaacaactataatttgttctctcttggttgtaatatcctcttcctttgccatgattg 383  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  12643924 gtatctgcaatcagctgttttgtgcccaaacttttcatagtggaaacaactataatttgttctctcttggttgtaatatccttttcctttgtcatgattg 12643825  T
Q  384 gtataactaaaattgtttccacctcttccttgctttcatttattgaaattattgtagtcaccacatgatcaaacttcatcggcatggtgtgtagaatttt 483  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  12643824 gtataactaaaattgtctccacctcttccttgctttcatttattgaaattattgtagtcaccacatgatcaaacttcatcggcatagtgtgtagaatttt 12643725  T
Q  484 ctctaccactttgttattcagaatatcttttccacacacccttatcttgttgacacgatttataacacaaaaaatatattgctatattgtttctgaattg 583  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  12643724 ctctaccactttgttattcagaatatcttttccacacacccttatcttgttgacacgatttataacacaaaaaatatattgctatactatttctgaattg 12643625  T
Q  584 aacattttataccttttgtattctctac 611  Q
    ||| ||||||||||||||||||||||||    
T  12643624 aacgttttataccttttgtattctctac 12643597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 22 - 415
Target Start/End: Complemental strand, 35842485 - 35842084
Alignment:
Q  22 cgatccattttt-aatctaataacaatttggcctttccccaaaatttgaatattt-----attttcaaaatccatggtagattttat-gtttcgttcaaa 114  Q
    |||||||| ||| ||||| ||| |||||||||||||||||  |||| ||||||||     |||| |||| | || |||||||||||  ||||||| || |    
T  35842485 cgatccatctttcaatctgatagcaatttggcctttcccctcaattggaatatttgaattatttccaaacttcacggtagattttaccgtttcgtccaga 35842386  T
Q  115 gaagagaacagttctttttatcaacgcatatgattactacatctagtgtccaaataccaaatattttcttcttctaaaagtgtattgcttgctaaaaata 214  Q
    ||||| || | ||||||||  | || ||| ||||||||||| |  |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  35842385 gaagaaaataattcttttttcccacacatgtgattactacacccggtgtccaaataccaaatattttcttcttcttaaagtgtattgcttgctaaaaata 35842286  T
Q  215 aactatatggaatttcataagactca-ctagtttttgatatgaattttctggcatgttttctcgatgtttgtatctgcaatcagctgttttgtgcccaaa 313  Q
    |||||| | || ||| | |||||||| | |  | |||||||||||| |||| ||| ||| || ||||||| |||||||| ||||||| |||||||||| |    
T  35842285 aactatgttgattttgagaagactcaccaaaatgttgatatgaattctctgccatatttgcttgatgtttatatctgcagtcagctgctttgtgcccata 35842186  T
Q  314 ctttccatagtggaaacaactataatttgttctctcttggttgtaatatcctcttcctttgccatgattggtataactaaaattgtttccacctcttcct 413  Q
    ||||||| | |  ||||||| || |||||||||||||||||||||| | ||||||||| ||||| | ||  |  ||| |||||||||||||||| |||||    
T  35842185 ctttccacaattaaaacaaccattatttgttctctcttggttgtaacaacctcttcctctgccacggttattggaaccaaaattgtttccaccttttcct 35842086  T
Q  414 tg 415  Q
    ||    
T  35842085 tg 35842084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 145 - 415
Target Start/End: Original strand, 12528667 - 12528938
Alignment:
Q  145 tgattactacatctagtgtccaaataccaaatattttcttcttctaaaagtgtattgcttgctaaaaataaactatatggaatttcataagactcactag 244  Q
    ||||||||||| |  |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | || ||| | ||||||| | |     
T  12528667 tgattactacacccggtgtccaaataccaaatattttcttcttctgaaagtgtattgcttgctaaaaataaactatgttgattttgagaagactcgccaa 12528766  T
Q  245 ttt-ttgatatgaattttctggcatgttttctcgatgtttgtatctgcaatcagctgttttgtgcccaaactttccatagtggaaacaactataatttgt 343  Q
      | |||||||||||| |||| ||| ||| || ||||||| |||||||| ||||||| |||||||||| |||||||| | |  ||||||| || ||||||    
T  12528767 aatgttgatatgaattctctgccatatttgcttgatgtttatatctgcagtcagctgctttgtgcccatactttccacaattaaaacaaccattatttgt 12528866  T
Q  344 tctctcttggttgtaatatcctcttcctttgccatgattggtataactaaaattgtttccacctcttccttg 415  Q
    |||||||||||||||||| ||||||||| ||||| | ||  |  ||| |||||||||||||||| |||||||    
T  12528867 tctctcttggttgtaataacctcttcctctgccacggttattggaaccaaaattgtttccaccttttccttg 12528938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 437 - 611
Target Start/End: Original strand, 12529243 - 12529417
Alignment:
Q  437 gtagtcaccacatgatcaaacttcatcggcatggtgtgtagaattttctctaccactttgttattcagaatatcttttccacacacccttatcttgttga 536  Q
    |||||||||||||||||| | ||||||||||||||| ||||||||||||| ||||| ||| |||   ||||||||| |||| |||| || || |||||||    
T  12529243 gtagtcaccacatgatcatatttcatcggcatggtgcgtagaattttctccaccaccttgctatcttgaatatcttctccatacactctcattttgttga 12529342  T
Q  537 cacgatttataacacaaaaaatatattgctatattgtttctgaattgaacattttataccttttgtattctctac 611  Q
    || |||||||||||| |  || |||||| |  | |||||| ||| || |||||| |||||||| |||||||||||    
T  12529343 caagatttataacacgagtaaaatattgatccactgtttcagaactggacatttcatacctttcgtattctctac 12529417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 438 - 611
Target Start/End: Complemental strand, 35841778 - 35841605
Alignment:
Q  438 tagtcaccacatgatcaaacttcatcggcatggtgtgtagaattttctctaccactttgttattcagaatatcttttccacacacccttatcttgttgac 537  Q
    ||||||||||||||||| | ||||||||||||||| ||||||||||||| ||||| ||| |||   ||||||||| |||| |||| || || ||||||||    
T  35841778 tagtcaccacatgatcatatttcatcggcatggtgcgtagaattttctccaccaccttgctatcttgaatatcttctccatacactctcattttgttgac 35841679  T
Q  538 acgatttataacacaaaaaatatattgctatattgtttctgaattgaacattttataccttttgtattctctac 611  Q
    | |||||||||||| |  || |||||| |  | |||||| ||| || |||||| |||||||| |||||||||||    
T  35841678 aagatttataacacgagtaaaatattgatccactgtttcagaactggacatttcatacctttcgtattctctac 35841605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 603 - 641
Target Start/End: Complemental strand, 12643570 - 12643532
Alignment:
Q  603 attctctactcctttatgtggcagcttcaatatgtccca 641  Q
    |||||||||||||||||| | ||||||||||||||||||    
T  12643570 attctctactcctttatgagtcagcttcaatatgtccca 12643532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 604 - 641
Target Start/End: Original strand, 12529447 - 12529484
Alignment:
Q  604 ttctctactcctttatgtggcagcttcaatatgtccca 641  Q
    ||||||||||||||||||| || |||||||||||||||    
T  12529447 ttctctactcctttatgtgacaacttcaatatgtccca 12529484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 604 - 641
Target Start/End: Complemental strand, 35841575 - 35841538
Alignment:
Q  604 ttctctactcctttatgtggcagcttcaatatgtccca 641  Q
    ||||||||||||||||||| || |||||||||||||||    
T  35841575 ttctctactcctttatgtgacaacttcaatatgtccca 35841538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 126; Significance: 1e-64; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 22 - 415
Target Start/End: Original strand, 42912650 - 42913051
Alignment:
Q  22 cgatccattttt-aatctaataacaatttggcctttccccaaaatttgaatattt-----attttcaaaatccatggtagattttat-gtttcgttcaaa 114  Q
    |||||||| ||| ||||| ||| |||||||||||||||||  |||| ||||||||     |||| |||| | || |||||||||||  ||||||| || |    
T  42912650 cgatccatctttcaatctgatagcaatttggcctttcccctcaattggaatatttgaattatttccaaacttcacggtagattttaccgtttcgtccaga 42912749  T
Q  115 gaagagaacagttctttttatcaacgcatatgattactacatctagtgtccaaataccaaatattttcttcttctaaaagtgtattgcttgctaaaaata 214  Q
    ||||| || | ||||||||  | || ||| |||||||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  42912750 gaagaaaataattcttttttcccacacatgtgattactacatccggtgtccaaataccaaatattttcttcttctgaaagtgtattgcttgctaaaaata 42912849  T
Q  215 aactatatggaatttcataagactca-ctagtttttgatatgaattttctggcatgttttctcgatgtttgtatctgcaatcagctgttttgtgcccaaa 313  Q
    |||||| | || ||| | |||||||| | |  | |||||||||||| |||| ||| ||| || ||||||| |||||||| ||||||| |||||||||| |    
T  42912850 aactatgttgattttgagaagactcaccaaaatgttgatatgaattctctgccatatttgcttgatgtttatatctgcagtcagctgctttgtgcccata 42912949  T
Q  314 ctttccatagtggaaacaactataatttgttctctcttggttgtaatatcctcttcctttgccatgattggtataactaaaattgtttccacctcttcct 413  Q
    ||||||| | |  ||||||| || |||||||||||||||||||||||| ||||||||| ||||| | ||  |  ||| |||||||||||||||| |||||    
T  42912950 ctttccacaattaaaacaaccattatttgttctctcttggttgtaataacctcttcctctgccacggttattggaaccaaaattgtttccaccttttcct 42913049  T
Q  414 tg 415  Q
    ||    
T  42913050 tg 42913051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 145 - 415
Target Start/End: Complemental strand, 42301228 - 42300957
Alignment:
Q  145 tgattactacatctagtgtccaaataccaaatattttcttcttctaaaagtgtattgcttgctaaaaataaactatatggaatttcataagactca-cta 243  Q
    ||||||||||| |  |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | || ||| | |||||||| | |    
T  42301228 tgattactacacccggtgtccaaataccaaatattttcttcttctgaaagtgtattgcttgctaaaaataaactatgttgattttgagaagactcaccaa 42301129  T
Q  244 gtttttgatatgaattttctggcatgttttctcgatgtttgtatctgcaatcagctgttttgtgcccaaactttccatagtggaaacaactataatttgt 343  Q
      | |||||||||||| |||| ||| ||| |  ||||||| ||||| || ||| ||| ||| |||||| |||||||| | |  || |||| || ||||||    
T  42301128 aatgttgatatgaattctctgccatatttgcctgatgtttatatctacagtcaactgctttatgcccatactttccacaattaaagcaaccattatttgt 42301029  T
Q  344 tctctcttggttgtaatatcctcttcctttgccatgattggtataactaaaattgtttccacctcttccttg 415  Q
    |||||||||||||||||| ||||||||| ||||| |  |  |  ||| ||||||||||||||||||||||||    
T  42301028 tctctcttggttgtaataacctcttcctctgccacggctattggaaccaaaattgtttccacctcttccttg 42300957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 437 - 611
Target Start/End: Original strand, 42913356 - 42913530
Alignment:
Q  437 gtagtcaccacatgatcaaacttcatcggcatggtgtgtagaattttctctaccactttgttattcagaatatcttttccacacacccttatcttgttga 536  Q
    |||||||||||||||||| | ||||||||||||||| ||||||||||||| ||||| ||| |||   ||||||||| |||| |||| || || |||||||    
T  42913356 gtagtcaccacatgatcatatttcatcggcatggtgcgtagaattttctccaccaccttgctatcttgaatatcttctccatacactctcattttgttga 42913455  T
Q  537 cacgatttataacacaaaaaatatattgctatattgtttctgaattgaacattttataccttttgtattctctac 611  Q
    ||  ||||||||||| |  || |||||| |  | |||||| ||| || |||||| |||||||| |||||||||||    
T  42913456 caatatttataacacgagtaaaatattgatccactgtttcagaactggacatttcatacctttcgtattctctac 42913530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 437 - 611
Target Start/End: Complemental strand, 42300652 - 42300478
Alignment:
Q  437 gtagtcaccacatgatcaaacttcatcggcatggtgtgtagaattttctctaccactttgttattcagaatatcttttccacacacccttatcttgttga 536  Q
    |||||||||||||||||| | |||||||||||||||  |||||||||||| ||||| ||| |||   ||||||||| |||| |||| || || |||||||    
T  42300652 gtagtcaccacatgatcatatttcatcggcatggtgcatagaattttctccaccaccttgctatcttgaatatcttctccatacactctcattttgttga 42300553  T
Q  537 cacgatttataacacaaaaaatatattgctatattgtttctgaattgaacattttataccttttgtattctctac 611  Q
    || |||| ||||||| |  || |||||| |  | |||||| ||| || |||||| |||||||| |||||||||||    
T  42300552 caagattcataacacgagtaaaatattgatccactgtttcagaactggacatttcatacctttcgtattctctac 42300478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 604 - 641
Target Start/End: Complemental strand, 42300448 - 42300411
Alignment:
Q  604 ttctctactcctttatgtggcagcttcaatatgtccca 641  Q
    ||||||||||||||||||| || |||||||||||||||    
T  42300448 ttctctactcctttatgtgacaacttcaatatgtccca 42300411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 604 - 641
Target Start/End: Original strand, 42913560 - 42913597
Alignment:
Q  604 ttctctactcctttatgtggcagcttcaatatgtccca 641  Q
    ||||||||||||||||||| || |||||||||||||||    
T  42913560 ttctctactcctttatgtgacaacttcaatatgtccca 42913597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 122; Significance: 3e-62; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 22 - 415
Target Start/End: Original strand, 29281791 - 29282192
Alignment:
Q  22 cgatccattttt-aatctaataacaatttggcctttccccaaaatttgaatattt-----attttcaaaatccatggtagattttat-gtttcgttcaaa 114  Q
    |||||||| ||| ||||| ||| |||||||||||||||||  |||| ||||||||     |||| |||| | || |||||||||||  ||||||| || |    
T  29281791 cgatccatctttcaatctgatagcaatttggcctttcccctcaattggaatatttgaattatttccaaacttcacggtagattttaccgtttcgtccaga 29281890  T
Q  115 gaagagaacagttctttttatcaacgcatatgattactacatctagtgtccaaataccaaatattttcttcttctaaaagtgtattgcttgctaaaaata 214  Q
    ||||| || | ||||||||  | || ||| ||||||||||| |  |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  29281891 gaagaaaataattcttttttcccacacatgtgattactacacccggtgtccaaataccaaatattttcttcttctgaaagtgtattgcttgctaaaaata 29281990  T
Q  215 aactatatggaatttcataagactca-ctagtttttgatatgaattttctggcatgttttctcgatgtttgtatctgcaatcagctgttttgtgcccaaa 313  Q
    |||||| | || ||| | |||||||| | |  | |||||||||||| |||| ||| ||| || ||||||| |||||||| ||||||| |||||||||| |    
T  29281991 aactatgttgattttgagaagactcaccaaaatgttgatatgaattctctgccatatttgcttgatgtttatatctgcagtcagctgctttgtgcccata 29282090  T
Q  314 ctttccatagtggaaacaactataatttgttctctcttggttgtaatatcctcttcctttgccatgattggtataactaaaattgtttccacctcttcct 413  Q
    ||||||| | |  ||||||| || |||||||||||||||||||||||| ||||||||| ||||| | ||  |  ||| |||||||||||||||| |||||    
T  29282091 ctttccacaattaaaacaaccattatttgttctctcttggttgtaataacctcttcctctgccacggttattggaaccaaaattgtttccaccttttcct 29282190  T
Q  414 tg 415  Q
    ||    
T  29282191 tg 29282192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 437 - 611
Target Start/End: Original strand, 29282497 - 29282671
Alignment:
Q  437 gtagtcaccacatgatcaaacttcatcggcatggtgtgtagaattttctctaccactttgttattcagaatatcttttccacacacccttatcttgttga 536  Q
    |||||||||||||||||| | ||||||||||||||| ||||||||||||| ||||| ||| |||   ||||||||| |||| |||| || || |||||||    
T  29282497 gtagtcaccacatgatcatatttcatcggcatggtgcgtagaattttctccaccaccttgctatcttgaatatcttctccatacactctcattttgttga 29282596  T
Q  537 cacgatttataacacaaaaaatatattgctatattgtttctgaattgaacattttataccttttgtattctctac 611  Q
    || |||||||||||| |  || |||||| |  | |||||| ||| || |||||| |||||||| |||||||||||    
T  29282597 caagatttataacacgagtaaaatattgatccactgtttcagaactggacatttcatacctttcgtattctctac 29282671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 604 - 641
Target Start/End: Original strand, 29282701 - 29282738
Alignment:
Q  604 ttctctactcctttatgtggcagcttcaatatgtccca 641  Q
    ||||||||||||||||||| || |||||||||||||||    
T  29282701 ttctctactcctttatgtgacaacttcaatatgtccca 29282738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 604 - 641
Target Start/End: Original strand, 49220696 - 49220733
Alignment:
Q  604 ttctctactcctttatgtggcagcttcaatatgtccca 641  Q
    ||||||||||||||||||| || |||||||||||||||    
T  49220696 ttctctactcctttatgtgacaacttcaatatgtccca 49220733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 117; Significance: 3e-59; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 34 - 415
Target Start/End: Original strand, 27729763 - 27730151
Alignment:
Q  34 aatctaataacaatttggcctttccccaaaatttgaatattt-----attttcaaaatccatggtagattttat-gtttcgttcaaagaagagaacagtt 127  Q
    ||||| ||| |||||||||||||||||  |||| ||||||||     |||| |||| | || |||||||||||  ||||||| || |||||| || | ||    
T  27729763 aatctgatagcaatttggcctttcccctcaattggaatatttgaattatttccaaacttcacggtagattttaccgtttcgtccagagaagaaaataatt 27729862  T
Q  128 ctttttatcaacgcatatgattactacatctagtgtccaaataccaaatattttcttcttctaaaagtgtattgcttgctaaaaataaactatatggaat 227  Q
    ||||||  | || ||| ||||||||||| |  |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | || |    
T  27729863 cttttttcccacacatgtgattactacacccggtgtccaaataccaaatattttcttcttctgaaagtgtattgcttgctaaaaataaactatgttgatt 27729962  T
Q  228 ttcataagactca-ctagtttttgatatgaattttctggcatgttttctcgatgtttgtatctgcaatcagctgttttgtgcccaaactttccatagtgg 326  Q
    || | |||| ||| | |  | |||||||||||| |||| ||| ||| || ||||||| |||||||| ||||||| |||||||||| |||||||| | |      
T  27729963 ttgagaagattcaccaaaatgttgatatgaattctctgccatatttgcttgatgtttatatctgcagtcagctgctttgtgcccatactttccacaatta 27730062  T
Q  327 aaacaactataatttgttctctcttggttgtaatatcctcttcctttgccatgattggtataactaaaattgtttccacctcttccttg 415  Q
    ||||||| || |||||||||||||||||||||||| ||||||||| ||||| | ||  |  ||| |||||||||||||||| |||||||    
T  27730063 aaacaaccattatttgttctctcttggttgtaataacctcttcctctgccacggttattggaaccaaaattgtttccaccttttccttg 27730151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 22 - 415
Target Start/End: Complemental strand, 45966772 - 45966371
Alignment:
Q  22 cgatccattttt-aatctaataacaatttggcctttccccaaaatttgaatattt-----attttcaaaatccatggtagattttat-gtttcgttcaaa 114  Q
    |||||||| ||| ||||| ||| |||||||||||||||||  |||| ||||||||     |||| |||| | || |||||||||||  ||||||| || |    
T  45966772 cgatccatctttcaatctgatagcaatttggcctttcccctcaattggaatatttgaattatttccaaacttcacggtagattttaccgtttcgtccaga 45966673  T
Q  115 gaagagaacagttctttttatcaacgcatatgattactacatctagtgtccaaataccaaatattttcttcttctaaaagtgtattgcttgctaaaaata 214  Q
    ||||| || | ||| ||||  | || ||| ||||||||||| |  |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  45966672 gaagaaaataattcctttttcccacacatgtgattactacacccggtgtccaaataccaaatattttcttcttctgaaagtgtattgcttgctaaaaata 45966573  T
Q  215 aactatatggaatttcataagactca-ctagtttttgatatgaattttctggcatgttttctcgatgtttgtatctgcaatcagctgttttgtgcccaaa 313  Q
    |||||| | || ||| | |||||||| | |  | |||||||||||| |||| ||| ||| || ||||||| |||||||| ||||||| |||||||||| |    
T  45966572 aactatgttgattttgagaagactcaccaaaatgttgatatgaattctctgccatatttgcttgatgtttatatctgcagtcagctgctttgtgcccata 45966473  T
Q  314 ctttccatagtggaaacaactataatttgttctctcttggttgtaatatcctcttcctttgccatgattggtataactaaaattgtttccacctcttcct 413  Q
    ||||||| | |  ||||||| || |||||||||||||||||||||||| ||||||||| ||||| | ||  |  ||| ||| |||||||||||| |||||    
T  45966472 ctttccacaattaaaacaaccattatttgttctctcttggttgtaataacctcttcctctgccacggttattggaaccaaagttgtttccaccttttcct 45966373  T
Q  414 tg 415  Q
    ||    
T  45966372 tg 45966371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 34 - 415
Target Start/End: Complemental strand, 24147482 - 24147094
Alignment:
Q  34 aatctaataacaatttggcctttccccaaaatttgaatattt-----attttcaaaatccatggtagatttta-tgtttcgttcaaagaagagaacagtt 127  Q
    ||||| ||| |||||||||||||||||  |||| ||||||||     |||| |||| | || ||||||||||| ||||||||||| ||||||||| | ||    
T  24147482 aatctgatagcaatttggcctttcccctcaattggaatatttgaattatttccaaacttcacggtagattttactgtttcgttcagagaagagaataatt 24147383  T
Q  128 ctttttatcaacgcatatgattactacatctagtgtccaaataccaaatattttcttcttctaaaagtgtattgcttgctaaaaataaactatatggaat 227  Q
    | ||||  | || ||||||||||||||| |  ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| | || |    
T  24147382 cctttttcccacacatatgattactacacccggtgtctaaataccaaatattttcttcttctgaaagtgtattgcttgctaaaaataaactatgttgatt 24147283  T
Q  228 ttcataagactcactag-tttttgatatgaattttctggcatgttttctcgatgtttgtatctgcaatcagctgttttgtgcccaaactttccatagtgg 326  Q
    ||   ||||||| |  |  | |||||||||||| |||| ||||||| |   |||||||||||| |||||||||  ||||||||   |||||||| | |      
T  24147282 ttgtgaagactcgcccgagtgttgatatgaattctctgccatgtttgccttatgtttgtatctacaatcagcttctttgtgcctgtactttccacaatta 24147183  T
Q  327 aaacaactataatttgttctctcttggttgtaatatcctcttcctttgccatgattggtataactaaaattgtttccacctcttccttg 415  Q
    || |||| || |||| | ||||||||||||||||| ||||||||| ||||| | ||| |  | | ||||||||||||||||||||||||    
T  24147182 aagcaaccattatttttcctctcttggttgtaataacctcttcctctgccacggttgttggagccaaaattgtttccacctcttccttg 24147094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 437 - 611
Target Start/End: Original strand, 27730456 - 27730630
Alignment:
Q  437 gtagtcaccacatgatcaaacttcatcggcatggtgtgtagaattttctctaccactttgttattcagaatatcttttccacacacccttatcttgttga 536  Q
    |||||||||||||||||| | ||||||||||||||| ||||||||||||| ||||| ||| |||   ||||||||| |||| |||| || || |||||||    
T  27730456 gtagtcaccacatgatcatatttcatcggcatggtgcgtagaattttctccaccaccttgctatcttgaatatcttctccatacactctcattttgttga 27730555  T
Q  537 cacgatttataacacaaaaaatatattgctatattgtttctgaattgaacattttataccttttgtattctctac 611  Q
    || |||||||||||| |  || |||||| |  | |||||| ||| || |||||| |||||||| |||||||||||    
T  27730556 caagatttataacacgagtaaaatattgatccactgtttcagaactggacatttcatacctttcgtattctctac 27730630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 437 - 611
Target Start/End: Complemental strand, 45966066 - 45965892
Alignment:
Q  437 gtagtcaccacatgatcaaacttcatcggcatggtgtgtagaattttctctaccactttgttattcagaatatcttttccacacacccttatcttgttga 536  Q
    |||||||||||||||||| | ||||||||||||||| ||||||||||||| ||||| ||| |||   ||||||||| |||| |||| || || |||||||    
T  45966066 gtagtcaccacatgatcatatttcatcggcatggtgcgtagaattttctccaccaccttgctatcttgaatatcttctccatacactctcattttgttga 45965967  T
Q  537 cacgatttataacacaaaaaatatattgctatattgtttctgaattgaacattttataccttttgtattctctac 611  Q
    || |||||||||||| |  || |||||| |  | |||||| ||| || |||||| |||||||| |||||||||||    
T  45965966 caagatttataacacgagtaaaatattgatccactgtttcagaactggacatttcatacctttcgtattctctac 45965892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 433 - 549
Target Start/End: Complemental strand, 24146810 - 24146694
Alignment:
Q  433 tattgtagtcaccacatgatcaaacttcatcggcatggtgtgtagaattttctctaccactttgttattcagaatatcttttccacacacccttatcttg 532  Q
    |||||||||||||||||||||| | ||||||||||||||| ||| ||||||||| || || ||| |||   ||||||||| |||| ||||||| ||||||    
T  24146810 tattgtagtcaccacatgatcatatttcatcggcatggtgcgtaaaattttctccactaccttgctatctggaatatcttctccatacaccctcatcttg 24146711  T
Q  533 ttgacacgatttataac 549  Q
    |||||| ||||||||||    
T  24146710 ttgacaagatttataac 24146694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 604 - 641
Target Start/End: Original strand, 27730660 - 27730697
Alignment:
Q  604 ttctctactcctttatgtggcagcttcaatatgtccca 641  Q
    ||||||||||||||||||| || |||||||||||||||    
T  27730660 ttctctactcctttatgtgacaacttcaatatgtccca 27730697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 604 - 641
Target Start/End: Complemental strand, 45965862 - 45965825
Alignment:
Q  604 ttctctactcctttatgtggcagcttcaatatgtccca 641  Q
    ||||||||||||||||||| || |||||||||||||||    
T  45965862 ttctctactcctttatgtgacaacttcaatatgtccca 45965825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 109; Significance: 2e-54; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 34 - 415
Target Start/End: Complemental strand, 29304492 - 29304104
Alignment:
Q  34 aatctaataacaatttggcctttccccaaaatttgaatattt-----attttcaaaatccatggtagattttatg-tttcgttcaaagaagagaacagtt 127  Q
    ||||| ||| |||||||||||||||||  |||| ||||||||     |||| |||| | || |||||||||||   |||||| || |||||| || | ||    
T  29304492 aatctgatagcaatttggcctttcccctcaattggaatatttgaattatttccaaacttcacggtagattttaccatttcgtccagagaagaaaataatt 29304393  T
Q  128 ctttttatcaacgcatatgattactacatctagtgtccaaataccaaatattttcttcttctaaaagtgtattgcttgctaaaaataaactatatggaat 227  Q
    | ||||  | || ||| ||||||||||| |  |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | || |    
T  29304392 cctttttcccacacatgtgattactacacccggtgtccaaataccaaatattttcttcttctgaaagtgtattgcttgctaaaaataaactatgttgatt 29304293  T
Q  228 ttcataagactcactagttt-ttgatatgaattttctggcatgttttctcgatgtttgtatctgcaatcagctgttttgtgcccaaactttccatagtgg 326  Q
    || | ||||||| | |   | |||||||||||| |||| ||| ||| || ||||||| |||||||| ||||||| |||||||||| |||||||| | |      
T  29304292 ttgagaagactcgccaaaatgttgatatgaattctctgccatatttgcttgatgtttatatctgcagtcagctgctttgtgcccatactttccacaatta 29304193  T
Q  327 aaacaactataatttgttctctcttggttgtaatatcctcttcctttgccatgattggtataactaaaattgtttccacctcttccttg 415  Q
    ||||||| || |||||||||||||||||||||||| ||||||||| ||||| | ||  |  ||| |||||||||||||||| |||||||    
T  29304192 aaacaaccattatttgttctctcttggttgtaataacctcttcctctgccacggttattggaaccaaaattgtttccaccttttccttg 29304104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 437 - 611
Target Start/End: Complemental strand, 29303799 - 29303625
Alignment:
Q  437 gtagtcaccacatgatcaaacttcatcggcatggtgtgtagaattttctctaccactttgttattcagaatatcttttccacacacccttatcttgttga 536  Q
    |||||||||||||||||| | ||||||||||||||| ||||||||||||| ||||| ||| |||   ||||||||| |||| |||| || || |||||||    
T  29303799 gtagtcaccacatgatcatatttcatcggcatggtgcgtagaattttctccaccaccttgctatcttgaatatcttctccatacactctcattttgttga 29303700  T
Q  537 cacgatttataacacaaaaaatatattgctatattgtttctgaattgaacattttataccttttgtattctctac 611  Q
    || |||||||||||| |  || |||||| |  | |||||| ||| || |||||| |||||||| |||||||||||    
T  29303699 caagatttataacacgagtaaaatattgatccactgtttcagaactggacatttcatacctttcgtattctctac 29303625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 604 - 641
Target Start/End: Complemental strand, 29303595 - 29303558
Alignment:
Q  604 ttctctactcctttatgtggcagcttcaatatgtccca 641  Q
    ||||||||||||||||||| || |||||||||||||||    
T  29303595 ttctctactcctttatgtgacaacttcaatatgtccca 29303558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 1e-27; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 227 - 413
Target Start/End: Original strand, 11402663 - 11402849
Alignment:
Q  227 tttcataagactcactagt-ttttgatatgaattttctggcatgttttctcgatgtttgtatctgcaatcagctgttttgtgcccaaactttccatagtg 325  Q
    ||||| |||||||| |||| ||||||||||||||||||| || |||| |  |||||| |||| ||||||| |||| |||||||| ||| |||| |  |||    
T  11402663 tttcacaagactcattagtgttttgatatgaattttctgccacgtttgcctgatgtt-gtatttgcaatcggctgctttgtgcctaaaatttcaacggtg 11402761  T
Q  326 gaaacaactataatttgttctctcttggttgtaatatcctcttcctttgccatgattggtataactaaaattgtttccacctcttcct 413  Q
     |||||||| ||||||| ||||||||| |||||| | |||||| || ||||| | |||||| ||| ||||||||||||||||||||||    
T  11402762 aaaacaactgtaatttggtctctcttgtttgtaagaacctctttctctgccacggttggtagaaccaaaattgtttccacctcttcct 11402849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 431 - 550
Target Start/End: Original strand, 11403131 - 11403250
Alignment:
Q  431 attattgtagtcaccacatgatcaaacttcatcggcatggtgtgtagaattttctctaccactttgttattcagaatatcttttccacacacccttatct 530  Q
    ||||| ||||||||||||||| ||||||| |||| ||| ||||||||||||||||| ||||| ||| ||| | ||||||||| |||| ||||| | || |    
T  11403131 attatcgtagtcaccacatgaccaaactttatcgacatagtgtgtagaattttctccaccaccttgctatccggaatatcttctccatacaccgtcattt 11403230  T
Q  531 tgttgacacgatttataaca 550  Q
    |||||||| |||||||||||    
T  11403231 tgttgacaagatttataaca 11403250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 191 - 378
Target Start/End: Complemental strand, 11402665 - 11402481
Alignment:
Q  191 aaagtgtattgcttgctaaaaataaactatatggaatttcataagactcactagt-ttttgatatgaattttctggcatgttttctcgatgtttgtatct 289  Q
    ||||||||||||||||||||| ||||| ||||||| ||||||||||||||| | | ||||||||| |||||| ||  || | | |  ||||||| |||||    
T  11402665 aaagtgtattgcttgctaaaattaaaccatatggattttcataagactcacaattgttttgatataaattttttgcaatctgtgcatgatgtttatatct 11402566  T
Q  290 gcaatcagctgttttgtgcccaaactttccatagtggaaacaactataatttgttctctcttggttgtaatatcctcttcctttgccat 378  Q
     |||||  ||| |||| || |||||||| |   ||| ||||    ||||||| | ||||||||||||||||| | ||||||||||||||    
T  11402565 tcaatcgtctgctttgcgctcaaacttttcgcggtgaaaac----ataatttctcctctcttggttgtaataacttcttcctttgccat 11402481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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