View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1244_low_33 (Length: 301)
Name: NF1244_low_33
Description: NF1244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1244_low_33 |
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Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 41 - 272
Target Start/End: Original strand, 31613945 - 31614176
Alignment:
| Q |
41 |
gtttatcactcctcaagatagcttcattgaagagttttcttcagtagaaaatttttcaactgaaaatttgtatgttcatcacaagtcaccaattgtttca |
140 |
Q |
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| T |
31613945 |
gtttatcactcctcaagatagcttcattgaagagttttcttcagaagaaaatttttcaactgaaaatttgtatgttcatcacaagtcaccaattgtttca |
31614044 |
T |
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| Q |
141 |
gattttgagacagaaacaaatgaaacagaaattcaaacagaagaagaagatgctgattctgttccagattctgttccaattgaaaacaggaccacttctc |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31614045 |
gattttgagacagaaacaaatgaaacagaaattcaaacagaagaagaagatgctgattctgttccagattctgttccaattgaaaacaggaccacttctc |
31614144 |
T |
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| Q |
241 |
ctatcacacttaacctatacaaaagtgatgac |
272 |
Q |
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||||||||||||||||||||||||| |||||| |
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| T |
31614145 |
ctatcacacttaacctatacaaaagggatgac |
31614176 |
T |
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