View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1244_low_35 (Length: 297)
Name: NF1244_low_35
Description: NF1244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1244_low_35 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 97 - 184
Target Start/End: Complemental strand, 40421687 - 40421600
Alignment:
| Q |
97 |
tcgagagattgatatttctatgaatttttatacaaataattatcgagaaaatagacaaatatatagtactatatatcatgtagtgatg |
184 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40421687 |
tcgagagattgatatttctatgaatttttatataaataattgtcgagaaaatagacaaatatatagtactatatatcatgtagtgatg |
40421600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 242 - 291
Target Start/End: Complemental strand, 40421541 - 40421492
Alignment:
| Q |
242 |
ccattgtatagttacaacgtagttgatgtgtgtagatacgagttcatatc |
291 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
40421541 |
ccattgtataattacaacgtagttgatgtgtgtagatatgagttcatatc |
40421492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 242 - 290
Target Start/End: Complemental strand, 40419164 - 40419116
Alignment:
| Q |
242 |
ccattgtatagttacaacgtagttgatgtgtgtagatacgagttcatat |
290 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
40419164 |
ccattgtatagttaaaacgtagttgatgtgtgtggatacgagttcatat |
40419116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 184
Target Start/End: Complemental strand, 40419270 - 40419225
Alignment:
| Q |
139 |
tcgagaaaatagacaaatatatagtactatatatcatgtagtgatg |
184 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
40419270 |
tcgagaaaataaaaaaatatatagtactatatatcatgtagtgatg |
40419225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 136
Target Start/End: Complemental strand, 40419470 - 40419432
Alignment:
| Q |
98 |
cgagagattgatatttctatgaatttttatacaaataat |
136 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
40419470 |
cgagaaattgatatttctatgaatttttatacaaataat |
40419432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 8950625 - 8950693
Alignment:
| Q |
7 |
ctttttaatataatcaatatgtatatggcctttaaaaacaaaaacttatatggcttaaatattattgga |
75 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
8950625 |
ctttttaatataatcaatatttatatggcctttaaaaacaaaaatttatatggcttaaatattattgga |
8950693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University