View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1244_low_36 (Length: 295)
Name: NF1244_low_36
Description: NF1244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1244_low_36 |
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Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 44 - 285
Target Start/End: Complemental strand, 6662954 - 6662712
Alignment:
| Q |
44 |
gttatcaagctgtaaaagattaaattagttacagtttttcttctatattttagattttgttgtttggagaaacttcagtcttctatttgaatttattact |
143 |
Q |
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| T |
6662954 |
gttatcaagctgtaaaagattaaattagttacggtttttcttctatattttagattttgttgtttggagaaacttcagtcttctatttgaatttattact |
6662855 |
T |
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| Q |
144 |
cattataatcttttgttgttggcgnnnnnnnnnnngataaactattttaagtaacctagcgtttcactttttatctgaattttacccctagtcccctaga |
243 |
Q |
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| T |
6662854 |
cattataatcttttgttgttggcgttttttttttttataaactattttaagtaacctagcgtttcactttttatctgaattttacccctactcccctaga |
6662755 |
T |
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| Q |
244 |
ctcgaacacaaattttatc-aaacactataaattcaatattct |
285 |
Q |
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| T |
6662754 |
ctcaaacacaaattttatcaaaacactataaattcaatattct |
6662712 |
T |
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